Gm54875 Gene Detail

Summary

• Symbol
  Gm54875
• Name
  predicted gene, 54875

• Feature Type
  miRNA gene
• IDs
  MGI:6846226
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:3068010-3068130 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  63 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846226	miRNA gene	Chr16:3068010-3068130 (+)
129S1/SvImJ	ENSMUSG00200011898	miRNA gene	Chr16:58657-58777 (+)
A/J	ENSMUSG00195052940	miRNA gene	Chr19:60872-60992 (+)
AKR/J	ENSMUSG00220017561	miRNA gene	Chr16:27041-27161 (+)
BALB/cJ	ENSMUSG00180051205	miRNA gene	Chr19:615751-615871 (+)
C3H/HeJ	ENSMUSG00175029777	miRNA gene	Chr16:58435-58555 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033020	miRNA gene	Chr16:59368-59488 (+)
CBA/J	ENSMUSG00210012215	miRNA gene	Chr16:65008-65128 (+)
DBA/2J	ENSMUSG00185054130	miRNA gene	Chr19:56723-56843 (+)
DBA/2J	ENSMUSG00185010464	miRNA gene	Chr16:13459-13579 (+)
FVB/NJ	ENSMUSG00205052189	miRNA gene	Chr19:51319-51439 (+)
JF1/MsJ	ENSUMUG00000037211	miRNA gene	Chr16:58867-58987 (+)
JF1/MsJ	ENSUMUG00000052748	miRNA gene	Chr7:130052613-130052729 (+)
LP/J	ENSMUSG00230012041	miRNA gene	Chr16:2554519-2554639 (+)
LP/J	ENSMUSG00230054404	miRNA gene	Chr19:976580-976700 (+)
NOD/ShiLtJ	ENSMUSG00190026893	miRNA gene	Chr16:58061-58181 (+)
NZO/HlLtJ	ENSMUSG00225027236	miRNA gene	Chr19:4685207-4685327 (+)
NZO/HlLtJ	ENSMUSG00225023129	miRNA gene	Chr16:5796835-5796955 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005017172	miRNA gene	Chr16:55007-55127 (+)

Homology

• Gene Tree
  Gm54875
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00002075092 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075092	Ensembl Gene Model | MGI Sequence Detail	121	C57BL/6J
transcript	ENSMUST00020182068	Ensembl | MGI Sequence Detail	121	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;