Gm54872 Gene Detail

Summary

• Symbol
  Gm54872
• Name
  predicted gene, 54872

• Feature Type
  miRNA gene
• IDs
  MGI:6846220
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:49134603-49135044 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846220	miRNA gene	Chr1:49134603-49135044 (+)
129S1/SvImJ	ENSMUSG00200002186	miRNA gene	Chr1:46614701-46615142 (+)
A/J	ENSMUSG00195002040	miRNA gene	Chr1:46508742-46509183 (+)
AKR/J	ENSMUSG00220003654	miRNA gene	Chr1:46275368-46275809 (+)
BALB/cJ	ENSMUSG00180003262	miRNA gene	Chr1:46423208-46423649 (+)
C3H/HeJ	ENSMUSG00175000132	miRNA gene	Chr1:46538463-46538904 (+)
C57BL/6NJ	ENSMUSG00215003094	miRNA gene	Chr1:46461820-46462261 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000978	miRNA gene	Chr1:46333690-46334144 (+)
CBA/J	ENSMUSG00210029914	miRNA gene	Chr1:46234903-46235344 (+)
DBA/2J	ENSMUSG00185030750	miRNA gene	Chr1:47361769-47362210 (+)
FVB/NJ	ENSMUSG00205004414	miRNA gene	Chr1:46188287-46188728 (+)
JF1/MsJ	ENSUMUG00000002753	miRNA gene	Chr1:46275885-46276339 (+)
LP/J	ENSMUSG00230001262	miRNA gene	Chr1:47355883-47356324 (+)
NOD/ShiLtJ	ENSMUSG00190002692	miRNA gene	Chr1:46380209-46380650 (+)
NZO/HlLtJ	ENSMUSG00225000902	miRNA gene	Chr1:50558071-50558512 (+)
PWK/PhJ	ENSLUMG00010002756	miRNA gene	Chr1:45880321-45880775 (-)
SPRET/EiJ	ENSMSPG00010013348	miRNA gene	Chr1:47503893-47504347 (+)
WSB/EiJ	ENSIUOG00005003595	miRNA gene	Chr1:46063344-46063785 (+)

Homology

• Gene Tree
  Gm54872
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076043 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076043	Ensembl Gene Model | MGI Sequence Detail	442	C57BL/6J
transcript	ENSMUST00020182092	Ensembl | MGI Sequence Detail	442	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;