Gm54871 Gene Detail

Summary

• Symbol
  Gm54871
• Name
  predicted gene, 54871

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6846218
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:47790458-47790727 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846218	unclassified non-coding RNA gene	Chr1:47790458-47790727 (-)
129S1/SvImJ	ENSMUSG00200002325	unclassified non-coding RNA gene	Chr1:45275348-45275617 (-)
A/J	ENSMUSG00195002124	unclassified non-coding RNA gene	Chr1:45189929-45190198 (-)
AKR/J	ENSMUSG00220003711	unclassified non-coding RNA gene	Chr1:44965934-44966203 (-)
BALB/cJ	ENSMUSG00180003400	unclassified non-coding RNA gene	Chr1:45121742-45122011 (-)
C3H/HeJ	ENSMUSG00175000175	unclassified non-coding RNA gene	Chr1:45219774-45220043 (-)
C57BL/6NJ	ENSMUSG00215003166	unclassified non-coding RNA gene	Chr1:45114726-45114995 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001134	unclassified non-coding RNA gene	Chr1:45040446-45040715 (-)
CBA/J	ENSMUSG00210030003	unclassified non-coding RNA gene	Chr1:44916271-44916540 (-)
DBA/2J	ENSMUSG00185031414	unclassified non-coding RNA gene	Chr1:46043086-46043355 (-)
FVB/NJ	ENSMUSG00205004177	unclassified non-coding RNA gene	Chr1:44873319-44873588 (-)
JF1/MsJ	ENSUMUG00000001962	unclassified non-coding RNA gene	Chr1:44994126-44994395 (-)
LP/J	ENSMUSG00230001607	unclassified non-coding RNA gene	Chr1:46011595-46011864 (-)
NOD/ShiLtJ	ENSMUSG00190002649	unclassified non-coding RNA gene	Chr1:45057040-45057309 (-)
NZO/HlLtJ	ENSMUSG00225001186	unclassified non-coding RNA gene	Chr1:49224809-49225078 (-)
PWK/PhJ	ENSLUMG00010002727	unclassified non-coding RNA gene	Chr1:44551145-44551414 (-)
SPRET/EiJ	ENSMSPG00010013112	unclassified non-coding RNA gene	Chr1:46256151-46256420 (-)
WSB/EiJ	ENSIUOG00005003626	unclassified non-coding RNA gene	Chr1:44724855-44725124 (-)

Homology

• Gene Tree
  Gm54871
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076633 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076633	Ensembl Gene Model | MGI Sequence Detail	270	C57BL/6J
transcript	ENSMUST00020181689	Ensembl | MGI Sequence Detail	270	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;