Gm54840 Gene Detail

Summary

• Symbol
  Gm54840
• Name
  predicted gene, 54840

• Feature Type
  rRNA gene
• IDs
  MGI:6846156
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:88545870-88545989 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846156	rRNA gene	Chr10:88545870-88545989 (-)
129S1/SvImJ	ENSMUSG00200031167	rRNA gene	Chr10:85043864-85043983 (-)
A/J	ENSMUSG00195022547	rRNA gene	Chr10:85488846-85488965 (-)
AKR/J	ENSMUSG00220022999	rRNA gene	Chr10:85095348-85095467 (-)
BALB/cJ	ENSMUSG00180033436	rRNA gene	Chr10:85491843-85491962 (-)
C3H/HeJ	ENSMUSG00175023110	rRNA gene	Chr10:85378506-85378625 (-)
C57BL/6NJ	ENSMUSG00215033941	rRNA gene	Chr10:85046482-85046601 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035235	rRNA gene	Chr10:84768326-84768445 (-)
CBA/J	ENSMUSG00210036181	rRNA gene	Chr10:85218953-85219072 (-)
DBA/2J	ENSMUSG00185044882	rRNA gene	Chr10:85448786-85448905 (-)
FVB/NJ	ENSMUSG00205022094	rRNA gene	Chr10:85070244-85070363 (-)
JF1/MsJ	ENSUMUG00000029264	rRNA gene	Chr10:86786880-86786999 (-)
LP/J	ENSMUSG00230018262	rRNA gene	Chr10:87334949-87335068 (-)
NOD/ShiLtJ	ENSMUSG00190018206	rRNA gene	Chr10:85474051-85474170 (-)
NZO/HlLtJ	ENSMUSG00225053562	rRNA gene	Chr10:91597360-91597479 (-)
PWK/PhJ	ENSLUMG00010023184	rRNA gene	Chr10:85075623-85075742 (-)
SPRET/EiJ	ENSMSPG00010033602	rRNA gene	Chr10:86593651-86593770 (-)
WSB/EiJ	ENSIUOG00005037602	rRNA gene	Chr10:85173465-85173584 (-)

Homology

• Gene Tree
  Gm54840
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076134 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076134	Ensembl Gene Model | MGI Sequence Detail	120	C57BL/6J
transcript	ENSMUST00020183280	Ensembl | MGI Sequence Detail	120	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;