Gm54830 Gene Detail

Summary

• Symbol
  Gm54830
• Name
  predicted gene, 54830

• Feature Type
  snoRNA gene
• IDs
  MGI:6846136
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:136051564-136051682 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846136	snoRNA gene	ChrX:136051564-136051682 (+)
129S1/SvImJ	ENSMUSG00200048858	snoRNA gene	ChrX:115046884-115047002 (+)
A/J	ENSMUSG00195048151	snoRNA gene	ChrX:118912731-118912849 (+)
AKR/J	ENSMUSG00220039799	snoRNA gene	ChrX:112358364-112358482 (+)
BALB/cJ	ENSMUSG00180039989	snoRNA gene	ChrX:115345891-115346009 (+)
C3H/HeJ	ENSMUSG00175036043	snoRNA gene	ChrX:119207341-119207459 (+)
C57BL/6NJ	ENSMUSG00215045840	snoRNA gene	ChrX:115754253-115754371 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041900	snoRNA gene	ChrX:116442018-116442136 (+)
CBA/J	ENSMUSG00210042168	snoRNA gene	ChrX:116142293-116142411 (+)
DBA/2J	ENSMUSG00185031069	snoRNA gene	ChrX:130033841-130033959 (+)
FVB/NJ	ENSMUSG00205038892	snoRNA gene	ChrX:114519535-114519653 (+)
JF1/MsJ	ENSUMUG00000032427	snoRNA gene	ChrX:149231163-149231281 (+)
LP/J	ENSMUSG00230040005	snoRNA gene	ChrX:136655488-136655606 (+)
NOD/ShiLtJ	ENSMUSG00190042927	snoRNA gene	ChrX:115523454-115523572 (+)
NZO/HlLtJ	ENSMUSG00225036957	snoRNA gene	ChrX:141349816-141349934 (+)
PWK/PhJ	ENSLUMG00010044674	snoRNA gene	ChrX:113984099-113984217 (+)
SPRET/EiJ	ENSMSPG00010040850	snoRNA gene	ChrX:118545064-118545182 (+)
WSB/EiJ	ENSIUOG00005040284	snoRNA gene	ChrX:116218247-116218365 (+)

Homology

• Gene Tree
  Gm54830
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075811 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075811	Ensembl Gene Model | MGI Sequence Detail	119	C57BL/6J
transcript	ENSMUST00020182143	Ensembl | MGI Sequence Detail	119	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;