Gm54821 Gene Detail

Summary

• Symbol
  Gm54821
• Name
  predicted gene, 54821

• Feature Type
  miRNA gene
• IDs
  MGI:6846118
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:55116024-55116144 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  21 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846118	miRNA gene	ChrX:55116024-55116144 (+)
129S1/SvImJ	ENSMUSG00200038104	miRNA gene	ChrX:37440656-37440776 (+)
A/J	ENSMUSG00195018691	miRNA gene	ChrX:40874846-40874966 (+)
AKR/J	ENSMUSG00220040297	miRNA gene	ChrX:36766549-36766669 (+)
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175043559	miRNA gene	ChrX:41033163-41033283 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040046	miRNA gene	ChrX:39351270-39351390 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185034742	miRNA gene	ChrX:50187888-50188008 (+)
FVB/NJ	ENSMUSG00205033323	miRNA gene	ChrX:37533576-37533696 (+)
JF1/MsJ	ENSUMUG00000028948	miRNA gene	ChrX:71074601-71074721 (+)
LP/J	ENSMUSG00230030375	miRNA gene	ChrX:56717632-56717752 (+)
NOD/ShiLtJ	ENSMUSG00190039355	miRNA gene	ChrX:37361735-37361855 (+)
NZO/HlLtJ	ENSMUSG00225032628	miRNA gene	ChrX:61958602-61958722 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005047255	miRNA gene	ChrX:38133306-38133426 (+)

Homology

• Gene Tree
  Gm54821
  

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00002075643 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075643	Ensembl Gene Model | MGI Sequence Detail	121	C57BL/6J
transcript	ENSMUST00020182183	Ensembl | MGI Sequence Detail	121	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;