Gm54820 Pseudogene Detail

Summary

• Symbol
  Gm54820
• Name
  predicted gene, 54820

• Feature Type
  pseudogene
• IDs
  MGI:6846117
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:55000779-55005232 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  216 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846117	pseudogene	ChrX:55000779-55005232 (-)
129S1/SvImJ	ENSMUSG00200038099	pseudogene	ChrX:37325419-37329872 (-)
A/J	ENSMUSG00195018682	pseudogene	ChrX:40759556-40764011 (-)
AKR/J	ENSMUSG00220040272	pseudogene	ChrX:36651286-36655739 (-)
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175043525	pseudogene	ChrX:40917885-40922340 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040040	pseudogene	ChrX:39249252-39253716 (-)
CBA/J	no annotation
DBA/2J	ENSMUSG00185034732	pseudogene	ChrX:50072638-50077091 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000028875	pseudogene	ChrX:70960493-70964945 (-)
LP/J	ENSMUSG00230030086	pseudogene	ChrX:56602400-56606853 (-)
NOD/ShiLtJ	ENSMUSG00190039313	pseudogene	ChrX:37246503-37250956 (-)
NZO/HlLtJ	ENSMUSG00225032561	pseudogene	ChrX:61843370-61847823 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010026199	pseudogene	ChrX:39581102-39585516 (-)
SPRET/EiJ	ENSMSPG00010026187	pseudogene	ChrX:38705449-38709852 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm54820
  

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00000118650 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118650	Ensembl Gene Model | MGI Sequence Detail	4454	C57BL/6J
transcript	ENSMUST00000239460	Ensembl | MGI Sequence Detail	417	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;