Gm54819 Gene Detail

Summary

• Symbol
  Gm54819
• Name
  predicted gene, 54819

• Feature Type
  miRNA gene
• IDs
  MGI:6846115
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:45350833-45350973 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846115	miRNA gene	Chr1:45350833-45350973 (+)
129S1/SvImJ	ENSMUSG00200002384	miRNA gene	Chr1:42977915-42978055 (+)
A/J	ENSMUSG00195001916	miRNA gene	Chr1:42713266-42713406 (+)
AKR/J	ENSMUSG00220003968	miRNA gene	Chr1:42630146-42630286 (+)
BALB/cJ	ENSMUSG00180003388	miRNA gene	Chr1:42697594-42697734 (+)
C3H/HeJ	ENSMUSG00175000220	miRNA gene	Chr1:42752082-42752222 (+)
C57BL/6NJ	ENSMUSG00215003154	miRNA gene	Chr1:42674039-42674179 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001097	miRNA gene	Chr1:42684346-42684486 (+)
CBA/J	ENSMUSG00210029857	miRNA gene	Chr1:42436297-42436437 (+)
DBA/2J	ENSMUSG00185031095	miRNA gene	Chr1:43567855-43567995 (+)
FVB/NJ	ENSMUSG00205004290	miRNA gene	Chr1:42607660-42607800 (+)
JF1/MsJ	ENSUMUG00000002303	miRNA gene	Chr1:42616131-42616271 (+)
LP/J	ENSMUSG00230001605	miRNA gene	Chr1:43583159-43583299 (+)
NOD/ShiLtJ	ENSMUSG00190002602	miRNA gene	Chr1:42652413-42652553 (+)
NZO/HlLtJ	ENSMUSG00225001183	miRNA gene	Chr1:46818272-46818412 (+)
PWK/PhJ	ENSLUMG00010002872	miRNA gene	Chr1:42191055-42191195 (+)
SPRET/EiJ	ENSMSPG00010013703	miRNA gene	Chr1:43893732-43893872 (+)
WSB/EiJ	ENSIUOG00005003755	miRNA gene	Chr1:42548548-42548688 (+)

Homology

• Gene Tree
  Gm54819
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002074901 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002074901	Ensembl Gene Model | MGI Sequence Detail	141	C57BL/6J
transcript	ENSMUST00020183014	Ensembl | MGI Sequence Detail	141	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54819:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6577	Chr1:45350784-45350798 (+)	-42 bp