Gm54818 Gene Detail

Summary

• Symbol
  Gm54818
• Name
  predicted gene, 54818

• Feature Type
  miRNA gene
• IDs
  MGI:6846113
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:3702544-3702660 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  69 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846113	miRNA gene	Chr5:3702544-3702660 (+)
129S1/SvImJ	ENSMUSG00200002688	miRNA gene	Chr5:299104-299220 (+)
A/J	ENSMUSG00195012739	miRNA gene	Chr5:367558-367676 (+)
AKR/J	ENSMUSG00220002309	miRNA gene	Chr5:299199-299315 (+)
BALB/cJ	ENSMUSG00180017418	miRNA gene	Chr5:128710-128826 (+)
C3H/HeJ	ENSMUSG00175029729	miRNA gene	Chr5:304389-304505 (+)
C57BL/6NJ	ENSMUSG00215024444	miRNA gene	Chr5:608428-608544 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001790	miRNA gene	Chr5:519205-519311 (+)
CBA/J	ENSMUSG00210002724	miRNA gene	Chr5:669072-669188 (+)
DBA/2J	ENSMUSG00185029009	miRNA gene	Chr5:672714-672830 (+)
FVB/NJ	ENSMUSG00205008858	miRNA gene	Chr5:367468-367584 (+)
JF1/MsJ	ENSUMUG00000004678	miRNA gene	Chr5:687487-687593 (+)
LP/J	ENSMUSG00230003397	miRNA gene	Chr5:4543652-4543768 (+)
NOD/ShiLtJ	ENSMUSG00190013831	miRNA gene	Chr5:302023-302129 (+)
NZO/HlLtJ	ENSMUSG00225006664	miRNA gene	Chr5:8379217-8379333 (+)
PWK/PhJ	ENSLUMG00010020063	miRNA gene	Chr5:654237-654335 (+)
SPRET/EiJ	ENSMSPG00010005119	miRNA gene	Chr5:494711-494807 (+)
WSB/EiJ	ENSIUOG00005027292	miRNA gene	Chr5:362717-362833 (+)

Homology

• Gene Tree
  Gm54818
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076516 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076516	Ensembl Gene Model | MGI Sequence Detail	117	C57BL/6J
transcript	ENSMUST00020182973	Ensembl | MGI Sequence Detail	117	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;