Gm54799 Gene Detail

Summary

• Symbol
  Gm54799
• Name
  predicted gene, 54799

• Feature Type
  miRNA gene
• IDs
  MGI:6846075
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:97551083-97551153 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  71 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846075	miRNA gene	Chr11:97551083-97551153 (-)
129S1/SvImJ	ENSMUSG00200053132	miRNA gene	Chr11:94798200-94798270 (-)
A/J	ENSMUSG00195052862	miRNA gene	Chr11:94520888-94520958 (-)
AKR/J	ENSMUSG00220051822	miRNA gene	Chr11:94780034-94780104 (-)
BALB/cJ	ENSMUSG00180052488	miRNA gene	Chr11:94792665-94792735 (-)
C3H/HeJ	ENSMUSG00175052305	miRNA gene	Chr11:94778239-94778309 (-)
C57BL/6NJ	ENSMUSG00215054128	miRNA gene	Chr11:94369098-94369168 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050670	miRNA gene	Chr11:94231854-94231924 (-)
CBA/J	ENSMUSG00210053728	miRNA gene	Chr11:94482954-94483024 (-)
DBA/2J	ENSMUSG00185052212	miRNA gene	Chr11:94828151-94828221 (-)
FVB/NJ	ENSMUSG00205049502	miRNA gene	Chr11:94694943-94695013 (-)
JF1/MsJ	ENSUMUG00000055602	miRNA gene	Chr11:95132928-95132998 (-)
LP/J	ENSMUSG00230050935	miRNA gene	Chr11:95881113-95881183 (-)
NOD/ShiLtJ	ENSMUSG00190052106	miRNA gene	Chr11:94870165-94870235 (-)
NZO/HlLtJ	ENSMUSG00225052488	miRNA gene	Chr11:97934228-97934298 (-)
PWK/PhJ	ENSLUMG00010052629	miRNA gene	Chr11:94682989-94683059 (-)
SPRET/EiJ	ENSMSPG00010050659	miRNA gene	Chr11:95179835-95179905 (-)
WSB/EiJ	ENSIUOG00005050920	miRNA gene	Chr11:94633377-94633447 (-)

Homology

• Gene Tree
  Gm54799
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075001 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075001	Ensembl Gene Model | MGI Sequence Detail	71	C57BL/6J
transcript	ENSMUST00020182334	Ensembl | MGI Sequence Detail	71	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54799:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr110463	Chr11:97551122-97551177 (-)	3 bp