Gm54781 Gene Detail

Summary

• Symbol
  Gm54781
• Name
  predicted gene, 54781

• Feature Type
  snoRNA gene
• IDs
  MGI:6846039
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:85858195-85858313 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846039	snoRNA gene	Chr3:85858195-85858313 (+)
129S1/SvImJ	ENSMUSG00200039820	snoRNA gene	Chr3:82694645-82694763 (+)
A/J	ENSMUSG00195053768	snoRNA gene	Chr3:82721011-82721129 (+)
AKR/J	ENSMUSG00220051880	snoRNA gene	Chr3:82666369-82666487 (+)
BALB/cJ	ENSMUSG00180049352	snoRNA gene	Chr3:82835937-82836055 (+)
C3H/HeJ	ENSMUSG00175047588	snoRNA gene	Chr3:82647794-82647912 (+)
C57BL/6NJ	ENSMUSG00215050300	snoRNA gene	Chr3:83100157-83100275 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001893	snoRNA gene	Chr3:82188865-82188983 (+)
CBA/J	ENSMUSG00210048530	snoRNA gene	Chr3:82792032-82792150 (+)
DBA/2J	ENSMUSG00185053132	snoRNA gene	Chr3:82924823-82924941 (+)
FVB/NJ	ENSMUSG00205006490	snoRNA gene	Chr3:81722801-81722919 (+)
JF1/MsJ	ENSUMUG00000051596	snoRNA gene	Chr3:82488488-82488602 (+)
LP/J	ENSMUSG00230037052	snoRNA gene	Chr3:84915059-84915177 (+)
NOD/ShiLtJ	ENSMUSG00190049561	snoRNA gene	Chr3:83182400-83182518 (+)
NZO/HlLtJ	ENSMUSG00225008061	snoRNA gene	Chr3:87650321-87650439 (+)
PWK/PhJ	ENSLUMG00010051978	snoRNA gene	Chr3:82576927-82577045 (+)
SPRET/EiJ	ENSMSPG00010050199	snoRNA gene	Chr3:83386253-83386372 (+)
WSB/EiJ	ENSIUOG00005051119	snoRNA gene	Chr3:83172036-83172154 (+)

Homology

• Gene Tree
  Gm54781
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075155 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075155	Ensembl Gene Model | MGI Sequence Detail	119	C57BL/6J
transcript	ENSMUST00020182813	Ensembl | MGI Sequence Detail	119	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;