Gm54780 Gene Detail

Summary

• Symbol
  Gm54780
• Name
  predicted gene, 54780

• Feature Type
  miRNA gene
• IDs
  MGI:6846037
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:38238816-38238924 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846037	miRNA gene	Chr15:38238816-38238924 (+)
129S1/SvImJ	ENSMUSG00200027645	miRNA gene	Chr15:35237195-35237303 (+)
A/J	ENSMUSG00195036857	miRNA gene	Chr15:35161304-35161412 (+)
AKR/J	ENSMUSG00220029310	miRNA gene	Chr15:35075183-35075291 (+)
BALB/cJ	ENSMUSG00180032380	miRNA gene	Chr15:35145952-35146060 (+)
C3H/HeJ	ENSMUSG00175027967	miRNA gene	Chr15:35344675-35344783 (+)
C57BL/6NJ	ENSMUSG00215025844	miRNA gene	Chr15:35152467-35152575 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011076	miRNA gene	Chr15:35153505-35153613 (+)
CBA/J	ENSMUSG00210018176	miRNA gene	Chr15:35259010-35259118 (+)
DBA/2J	ENSMUSG00185035463	miRNA gene	Chr15:35239858-35239966 (+)
FVB/NJ	ENSMUSG00205030660	miRNA gene	Chr15:35127708-35127816 (+)
JF1/MsJ	ENSUMUG00000035461	miRNA gene	Chr15:35132902-35133010 (+)
LP/J	ENSMUSG00230012673	miRNA gene	Chr15:38618265-38618373 (+)
NOD/ShiLtJ	ENSMUSG00190034104	miRNA gene	Chr15:35205227-35205335 (+)
NZO/HlLtJ	ENSMUSG00225032008	miRNA gene	Chr15:38931279-38931387 (+)
PWK/PhJ	ENSLUMG00010032718	miRNA gene	Chr15:35284817-35284925 (+)
SPRET/EiJ	ENSMSPG00010013452	miRNA gene	Chr15:35944869-35944973 (+)
WSB/EiJ	ENSIUOG00005034031	miRNA gene	Chr15:35254410-35254518 (+)

Homology

• Gene Tree
  Gm54780
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075169 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075169	Ensembl Gene Model | MGI Sequence Detail	109	C57BL/6J
transcript	ENSMUST00020182288	Ensembl | MGI Sequence Detail	109	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;