Gm54779 Gene Detail

Summary

• Symbol
  Gm54779
• Name
  predicted gene, 54779

• Feature Type
  miRNA gene
• IDs
  MGI:6846035
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:101520338-101520447 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  74 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6846035	miRNA gene	Chr12:101520338-101520447 (+)
129S1/SvImJ	ENSMUSG00200029950	miRNA gene	Chr12:93325707-93325816 (+)
A/J	ENSMUSG00195021387	miRNA gene	Chr12:95850194-95850303 (+)
AKR/J	ENSMUSG00220045339	miRNA gene	Chr12:93804787-93804896 (+)
BALB/cJ	ENSMUSG00180039953	miRNA gene	Chr12:95050913-95051022 (+)
C3H/HeJ	ENSMUSG00175034203	miRNA gene	Chr12:97663142-97663251 (+)
C57BL/6NJ	ENSMUSG00215040892	miRNA gene	Chr12:94321278-94321387 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022534	miRNA gene	Chr12:93719218-93719327 (+)
CBA/J	ENSMUSG00210015247	miRNA gene	Chr12:94709731-94709840 (+)
DBA/2J	ENSMUSG00185048147	miRNA gene	Chr12:96501746-96501855 (+)
FVB/NJ	ENSMUSG00205002106	miRNA gene	Chr4:14832349-14832458 (+)
FVB/NJ	ENSMUSG00205022849	miRNA gene	Chr12:93722161-93722270 (+)
JF1/MsJ	ENSUMUG00000035604	miRNA gene	Chr12:101222053-101222162 (+)
LP/J	ENSMUSG00230031307	miRNA gene	Chr12:103590759-103590868 (+)
LP/J	ENSMUSG00230001637	miRNA gene	Chr4:18524376-18524485 (+)
NOD/ShiLtJ	ENSMUSG00190036632	miRNA gene	Chr12:91433373-91433482 (-)
NZO/HlLtJ	ENSMUSG00225039204	miRNA gene	Chr12:105314496-105314605 (+)
NZO/HlLtJ	ENSMUSG00225002124	miRNA gene	Chr4:22556608-22556717 (+)
PWK/PhJ	ENSLUMG00010014306	miRNA gene	Chr12:94687622-94687731 (+)
SPRET/EiJ	ENSMSPG00010020716	miRNA gene	Chr12:97198228-97198326 (+)
WSB/EiJ	ENSIUOG00005010174	miRNA gene	Chr12:93730211-93730320 (+)

Homology

• Gene Tree
  Gm54779
  

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00002075596 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075596	Ensembl Gene Model | MGI Sequence Detail	110	C57BL/6J
transcript	ENSMUST00020182739	Ensembl | MGI Sequence Detail	110	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;