Gm54748 Gene Detail

Summary

• Symbol
  Gm54748
• Name
  predicted gene, 54748

• Feature Type
  miRNA gene
• IDs
  MGI:6845973
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr16:19702549-19702650 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845973	miRNA gene	Chr16:19702549-19702650 (-)
129S1/SvImJ	ENSMUSG00200046812	miRNA gene	Chr16:16699860-16699961 (-)
A/J	ENSMUSG00195036532	miRNA gene	Chr16:16257350-16257451 (-)
AKR/J	ENSMUSG00220047245	miRNA gene	Chr16:16575036-16575137 (-)
BALB/cJ	ENSMUSG00180041212	miRNA gene	Chr16:16498609-16498710 (-)
C3H/HeJ	ENSMUSG00175051346	miRNA gene	Chr16:16643699-16643800 (-)
C57BL/6NJ	ENSMUSG00215042633	miRNA gene	Chr16:16364618-16364719 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046404	miRNA gene	Chr16:16994764-16994865 (-)
CBA/J	ENSMUSG00210047618	miRNA gene	Chr16:16665508-16665609 (-)
DBA/2J	ENSMUSG00185034470	miRNA gene	Chr16:16604210-16604311 (-)
FVB/NJ	ENSMUSG00205049034	miRNA gene	Chr16:16606701-16606802 (-)
JF1/MsJ	ENSUMUG00000054787	miRNA gene	Chr16:16797650-16797751 (-)
LP/J	ENSMUSG00230047807	miRNA gene	Chr16:19183550-19183651 (-)
NOD/ShiLtJ	ENSMUSG00190050586	miRNA gene	Chr16:16745780-16745881 (-)
NZO/HlLtJ	ENSMUSG00225038780	miRNA gene	Chr16:22429354-22429455 (-)
PWK/PhJ	ENSLUMG00010049544	miRNA gene	Chr16:16613374-16613475 (-)
SPRET/EiJ	ENSMSPG00010048196	miRNA gene	Chr16:16485072-16485173 (-)
WSB/EiJ	ENSIUOG00005046092	miRNA gene	Chr16:16802105-16802206 (-)

Homology

• Gene Tree
  Gm54748
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075497 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075497	Ensembl Gene Model | MGI Sequence Detail	102	C57BL/6J
transcript	ENSMUST00020182474	Ensembl | MGI Sequence Detail	102	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54748:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140340	Chr16:19702623-19702665 (-)	6 bp
Tssr140339	Chr16:19702611-19702622 (-)	33 bp
Tssr4807	Chr16:19702574-19702581 (-)	72 bp