Gm54730 Gene Detail

Summary

• Symbol
  Gm54730
• Name
  predicted gene, 54730

• Feature Type
  miRNA gene
• IDs
  MGI:6845938
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:86541180-86541312 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  63 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845938	miRNA gene	Chr10:86541180-86541312 (-)
129S1/SvImJ	ENSMUSG00200030916	miRNA gene	Chr10:83037916-83038048 (-)
A/J	ENSMUSG00195021921	miRNA gene	Chr10:83483053-83483185 (-)
AKR/J	ENSMUSG00220023266	miRNA gene	Chr10:83085329-83085461 (-)
BALB/cJ	ENSMUSG00180035550	miRNA gene	Chr10:83486162-83486294 (-)
C3H/HeJ	ENSMUSG00175024200	miRNA gene	Chr10:83375773-83375905 (-)
C57BL/6NJ	ENSMUSG00215032928	miRNA gene	Chr10:83032573-83032705 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035635	miRNA gene	Chr10:82796398-82796531 (-)
CBA/J	ENSMUSG00210037503	miRNA gene	Chr10:83217178-83217310 (-)
DBA/2J	ENSMUSG00185041993	miRNA gene	Chr10:83434684-83434816 (-)
FVB/NJ	ENSMUSG00205018881	miRNA gene	Chr10:83093566-83093698 (-)
JF1/MsJ	ENSUMUG00000022468	miRNA gene	Chr10:84790474-84790606 (-)
LP/J	ENSMUSG00230018389	miRNA gene	Chr10:85320599-85320731 (-)
NOD/ShiLtJ	ENSMUSG00190020187	miRNA gene	Chr10:83468622-83468754 (-)
NZO/HlLtJ	ENSMUSG00225053717	miRNA gene	Chr10:89591834-89591966 (-)
PWK/PhJ	ENSLUMG00010023639	miRNA gene	Chr10:83075813-83075945 (-)
SPRET/EiJ	ENSMSPG00010035262	miRNA gene	Chr10:84549263-84549395 (-)
WSB/EiJ	ENSIUOG00005037343	miRNA gene	Chr10:83162833-83162965 (-)

Homology

• Gene Tree
  Gm54730
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076916 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076916	Ensembl Gene Model | MGI Sequence Detail	133	C57BL/6J
transcript	ENSMUST00020182049	Ensembl | MGI Sequence Detail	133	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54730:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98791	Chr10:86541349-86541356 (-)	-41 bp
Tssr98790	Chr10:86541317-86541335 (-)	-14 bp