Gm54727 Gene Detail

Summary

• Symbol
  Gm54727
• Name
  predicted gene, 54727

• Feature Type
  miRNA gene
• IDs
  MGI:6845932
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:43610769-43610842 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845932	miRNA gene	Chr18:43610769-43610842 (-)
129S1/SvImJ	ENSMUSG00200030920	miRNA gene	Chr18:40642530-40642600 (-)
A/J	ENSMUSG00195025141	miRNA gene	Chr18:40801960-40802030 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180008011	miRNA gene	Chr18:41252924-41252997 (-)
C3H/HeJ	ENSMUSG00175010995	miRNA gene	Chr18:40753929-40754002 (-)
C57BL/6NJ	ENSMUSG00215009460	miRNA gene	Chr18:40489562-40489635 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014283	miRNA gene	Chr18:40353350-40353388 (-)
CBA/J	ENSMUSG00210022603	miRNA gene	Chr18:40818691-40818764 (-)
DBA/2J	ENSMUSG00185028169	miRNA gene	Chr18:40727396-40727469 (-)
FVB/NJ	ENSMUSG00205015593	miRNA gene	Chr18:40369913-40369982 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230029115	miRNA gene	Chr18:42832989-42833059 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225027499	miRNA gene	Chr18:42710841-42710914 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010013842	miRNA gene	Chr18:41087838-41087901 (-)
WSB/EiJ	ENSIUOG00005009631	miRNA gene	Chr18:40471303-40471376 (-)

Homology

• Gene Tree
  Gm54727
  

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00002076479 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076479	Ensembl Gene Model | MGI Sequence Detail	74	C57BL/6J
transcript	ENSMUST00020182936	Ensembl | MGI Sequence Detail	74	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54727:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr153167	Chr18:43610829-43610866 (-)	-6 bp