Gm54719 Gene Detail

Summary

• Symbol
  Gm54719
• Name
  predicted gene, 54719

• Feature Type
  lncRNA gene
• IDs
  MGI:6845916
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:48350426-48373716 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  585 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845916	lncRNA gene	Chr6:48350426-48373716 (-)
129S1/SvImJ	ENSMUSG00200005387	lncRNA gene	Chr6:45256674-45277951 (-)
A/J	ENSMUSG00195007311	lncRNA gene	Chr6:45032187-45053485 (-)
AKR/J	ENSMUSG00220004881	lncRNA gene	Chr6:44741520-44762824 (-)
BALB/cJ	ENSMUSG00180025265	lncRNA gene	Chr6:45344939-45366238 (-)
C3H/HeJ	ENSMUSG00175017977	lncRNA gene	Chr6:45106585-45127883 (-)
C57BL/6NJ	ENSMUSG00215009612	lncRNA gene	Chr6:45301704-45322979 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006328	lincRNA gene	Chr6:42801379-42821396 (-)
CAST/EiJ	ENSTCUG00005005311	lncRNA gene	Chr6:44629629-44644625 (-)
CBA/J	ENSMUSG00210018284	lncRNA gene	Chr6:45151438-45172737 (-)
DBA/2J	ENSMUSG00185013895	lncRNA gene	Chr6:45733123-45754423 (-)
FVB/NJ	ENSMUSG00205030675	lncRNA gene	Chr6:45397565-45418860 (-)
JF1/MsJ	ENSUMUG00000015821	lncRNA gene	Chr6:45094159-45116243 (-)
LP/J	ENSMUSG00230021484	lncRNA gene	Chr6:46753813-46775086 (-)
NOD/ShiLtJ	ENSMUSG00190034615	lncRNA gene	Chr6:45071432-45092730 (-)
NZO/HlLtJ	ENSMUSG00225019342	lncRNA gene	Chr6:48790338-48811612 (-)
PWK/PhJ	ENSLUMG00010021019	lncRNA gene	Chr6:44728769-44750092 (-)
SPRET/EiJ	ENSMSPG00010010679	lncRNA gene	Chr6:45356344-45375517 (-)
WSB/EiJ	ENSIUOG00005029584	lncRNA gene	Chr6:45362071-45387467 (-)

Homology

• Gene Tree
  Gm54719
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000107875 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107875	Ensembl Gene Model | MGI Sequence Detail	23291	C57BL/6J
transcript	ENSMUST00000181943	Ensembl | MGI Sequence Detail	2852	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54719:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60725	Chr6:48373675-48373701 (-)	28 bp