Gm54699 Gene Detail

Summary

• Symbol
  Gm54699
• Name
  predicted gene, 54699

• Feature Type
  snRNA gene
• IDs
  MGI:6845876
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:75878226-75878309 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  145 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845876	snRNA gene	Chr9:75878226-75878309 (-)
129S1/SvImJ	ENSMUSG00200019993	snRNA gene	Chr9:72983989-72984072 (-)
A/J	ENSMUSG00195011138	snRNA gene	Chr9:72748169-72748252 (-)
AKR/J	ENSMUSG00220015568	snRNA gene	Chr9:72874585-72874668 (-)
BALB/cJ	ENSMUSG00180021165	snRNA gene	Chr9:72860758-72860841 (-)
C3H/HeJ	ENSMUSG00175012470	snRNA gene	Chr9:72896633-72896716 (-)
C57BL/6NJ	ENSMUSG00215019830	snRNA gene	Chr9:72836241-72836324 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009809	snRNA gene	Chr9:72586319-72586402 (-)
CBA/J	ENSMUSG00210013426	snRNA gene	Chr9:72951103-72951186 (-)
DBA/2J	ENSMUSG00185008042	snRNA gene	Chr9:72981546-72981629 (-)
FVB/NJ	ENSMUSG00205032156	snRNA gene	Chr9:73268776-73268859 (-)
JF1/MsJ	ENSUMUG00000043480	snRNA gene	Chr9:72975584-72975667 (-)
LP/J	ENSMUSG00230025661	snRNA gene	Chr9:73160797-73160880 (-)
NOD/ShiLtJ	ENSMUSG00190036956	snRNA gene	Chr9:73076320-73076403 (-)
NZO/HlLtJ	ENSMUSG00225026255	snRNA gene	Chr9:73279038-73279121 (-)
PWK/PhJ	ENSLUMG00010016848	snRNA gene	Chr9:72897988-72898071 (-)
SPRET/EiJ	ENSMSPG00010004138	snRNA gene	Chr9:74051325-74051408 (-)
WSB/EiJ	ENSIUOG00005027418	snRNA gene	Chr9:72441890-72441973 (-)

Homology

• Gene Tree
  Gm54699
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075228 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075228	Ensembl Gene Model | MGI Sequence Detail	84	C57BL/6J
transcript	ENSMUST00020182619	Ensembl | MGI Sequence Detail	84	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54699:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr90574	Chr9:75878307-75878313 (-)	-1 bp