Gm54689 Gene Detail

Summary

• Symbol
  Gm54689
• Name
  predicted gene, 54689

• Feature Type
  rRNA gene
• IDs
  MGI:6845856
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:38489631-38489727 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845856	rRNA gene	Chr18:38489631-38489727 (+)
129S1/SvImJ	ENSMUSG00200044377	rRNA gene	Chr18:35486903-35486999 (+)
A/J	ENSMUSG00195038227	rRNA gene	Chr18:35639511-35639607 (+)
AKR/J	ENSMUSG00220017467	rRNA gene	Chr18:35607549-35607645 (+)
BALB/cJ	ENSMUSG00180021641	rRNA gene	Chr18:36089131-36089227 (+)
C3H/HeJ	ENSMUSG00175042045	rRNA gene	Chr18:35602619-35602715 (+)
C57BL/6NJ	ENSMUSG00215028297	rRNA gene	Chr18:35359286-35359382 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023978	rRNA gene	Chr18:35219467-35219563 (+)
CBA/J	ENSMUSG00210021669	rRNA gene	Chr18:35631148-35631244 (+)
DBA/2J	ENSMUSG00185020884	rRNA gene	Chr18:35565732-35565828 (+)
FVB/NJ	ENSMUSG00205033198	rRNA gene	Chr18:35266531-35266627 (+)
JF1/MsJ	ENSUMUG00000047666	rRNA gene	Chr18:35697217-35697313 (+)
LP/J	ENSMUSG00230048917	rRNA gene	Chr18:37681013-37681109 (+)
NOD/ShiLtJ	ENSMUSG00190022016	rRNA gene	Chr18:35350942-35351038 (+)
NZO/HlLtJ	ENSMUSG00225047570	rRNA gene	Chr18:37587782-37587878 (+)
PWK/PhJ	ENSLUMG00010013525	rRNA gene	Chr18:35846437-35846533 (+)
SPRET/EiJ	ENSMSPG00010024077	rRNA gene	Chr18:35877387-35877478 (+)
WSB/EiJ	ENSIUOG00005007984	rRNA gene	Chr18:35346627-35346723 (+)

Homology

• Gene Tree
  Gm54689
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076358 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076358	Ensembl Gene Model | MGI Sequence Detail	97	C57BL/6J
transcript	ENSMUST00020182073	Ensembl | MGI Sequence Detail	97	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;