Gm54687 Gene Detail

Summary

• Symbol
  Gm54687
• Name
  predicted gene, 54687

• Feature Type
  miRNA gene
• IDs
  MGI:6845852
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:43957937-43958046 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  89 from dbSNP Build 142
• Strain Annotations
  37

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845852	miRNA gene	Chr1:43957937-43958046 (-)
129S1/SvImJ	ENSMUSG00200002057	miRNA gene	Chr1:41586969-41587078 (-)
A/J	ENSMUSG00195001911	miRNA gene	Chr1:41294426-41294535 (-)
AKR/J	ENSMUSG00220003944	miRNA gene	Chr1:41291942-41292051 (-)
BALB/cJ	ENSMUSG00180003200	miRNA gene	Chr1:41303029-41303138 (-)
C3H/HeJ	ENSMUSG00175044744	miRNA gene	Chr4:108382455-108382564 (-)
C3H/HeJ	ENSMUSG00175000237	miRNA gene	Chr1:41302098-41302207 (-)
C3H/HeJ	ENSMUSG00175048588	miRNA gene	Chr9:106512977-106513082 (-)
C57BL/6NJ	ENSMUSG00215003031	miRNA gene	Chr1:41278143-41278252 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000894	miRNA gene	Chr1:41366676-41366785 (-)
CAST/EiJ	ENSTCUG00005018321	miRNA gene	Chr2:33280650-33280755 (-)
CAST/EiJ	ENSTCUG00005032738	miRNA gene	Chr7:6392686-6392795 (+)
CBA/J	ENSMUSG00210029146	miRNA gene	Chr1:41053651-41053760 (-)
DBA/2J	ENSMUSG00185051142	miRNA gene	Chr4:109523731-109523840 (-)
DBA/2J	ENSMUSG00185030276	miRNA gene	Chr1:42154821-42154930 (-)
DBA/2J	ENSMUSG00185046865	miRNA gene	Chr9:106560974-106561079 (-)
DBA/2J	ENSMUSG00185051139	miRNA gene	Chr4:108652295-108652404 (-)
FVB/NJ	ENSMUSG00205003947	miRNA gene	Chr1:41239812-41239921 (-)
FVB/NJ	ENSMUSG00205045804	miRNA gene	Chr4:107565903-107566012 (-)
JF1/MsJ	ENSUMUG00000002216	miRNA gene	Chr1:41365876-41365985 (-)
LP/J	ENSMUSG00230047717	miRNA gene	Chr4:112843641-112843750 (-)
LP/J	ENSMUSG00230001343	miRNA gene	Chr1:42188614-42188723 (-)
LP/J	ENSMUSG00230010007	miRNA gene	Chr4:111972276-111972385 (-)
NOD/ShiLtJ	ENSMUSG00190049364	miRNA gene	Chr4:107365433-107365542 (-)
NOD/ShiLtJ	ENSMUSG00190002760	miRNA gene	Chr1:41265526-41265635 (-)
NZO/HlLtJ	ENSMUSG00225001001	miRNA gene	Chr1:45423737-45423846 (-)
PWK/PhJ	ENSLUMG00010002794	miRNA gene	Chr1:40876967-40877076 (-)
PWK/PhJ	ENSLUMG00010046440	miRNA gene	Chr9:106353416-106353521 (-)
PWK/PhJ	ENSLUMG00010049391	miRNA gene	Chr4:106859620-106859729 (-)
PWK/PhJ	ENSLUMG00010052247	miRNA gene	Chr7:5022032-5022141 (-)
SPRET/EiJ	ENSMSPG00010002768	miRNA gene	Chr4:26921935-26922044 (+)
SPRET/EiJ	ENSMSPG00010044138	miRNA gene	Chr2:34155897-34156002 (-)
SPRET/EiJ	ENSMSPG00010012955	miRNA gene	Chr1:42460469-42460578 (-)
SPRET/EiJ	ENSMSPG00010017977	miRNA gene	Chr8:26505212-26505318 (-)
SPRET/EiJ	ENSMSPG00010039674	miRNA gene	Chr10:124842373-124842481 (+)
SPRET/EiJ	ENSMSPG00010008726	miRNA gene	Chr4:97480236-97480345 (-)
WSB/EiJ	ENSIUOG00005003962	miRNA gene	Chr1:41239409-41239518 (-)

Homology

• Gene Tree
  Gm54687
  

Sequences &
Gene Models

• All Sequences
  39

• Ensembl
  ENSMUSG00002075225 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075225	Ensembl Gene Model | MGI Sequence Detail	110	C57BL/6J
transcript	ENSMUST00020182643	Ensembl | MGI Sequence Detail	110	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;