Gm54686 Gene Detail

Summary

• Symbol
  Gm54686
• Name
  predicted gene, 54686

• Feature Type
  miRNA gene
• IDs
  MGI:6845850
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr15:74435670-74435764 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  74 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845850	miRNA gene	Chr15:74435670-74435764 (+)
129S1/SvImJ	ENSMUSG00200054177	miRNA gene	Chr15:71539072-71539166 (+)
A/J	ENSMUSG00195051707	miRNA gene	Chr15:71608659-71608753 (+)
AKR/J	ENSMUSG00220052825	miRNA gene	Chr15:71529221-71529315 (+)
BALB/cJ	ENSMUSG00180053308	miRNA gene	Chr15:71381128-71381222 (+)
C3H/HeJ	ENSMUSG00175053551	miRNA gene	Chr15:71743063-71743157 (+)
C57BL/6NJ	ENSMUSG00215052860	miRNA gene	Chr15:71438297-71438391 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020541	miRNA gene	Chr15:71039959-71040053 (+)
CBA/J	ENSMUSG00210048873	miRNA gene	Chr15:71518422-71518516 (+)
DBA/2J	ENSMUSG00185051444	miRNA gene	Chr15:71463799-71463893 (+)
FVB/NJ	ENSMUSG00205050687	miRNA gene	Chr15:71209657-71209751 (+)
JF1/MsJ	ENSUMUG00000018545	miRNA gene	Chr15:71102093-71102187 (+)
LP/J	ENSMUSG00230052909	miRNA gene	Chr15:74827897-74827991 (+)
NOD/ShiLtJ	ENSMUSG00190053828	miRNA gene	Chr15:71573081-71573175 (+)
NZO/HlLtJ	ENSMUSG00225054066	miRNA gene	Chr15:75099848-75099942 (+)
PWK/PhJ	ENSLUMG00010011098	miRNA gene	Chr15:71379640-71379734 (+)
SPRET/EiJ	ENSMSPG00010051504	miRNA gene	Chr15:73065990-73066084 (+)
WSB/EiJ	ENSIUOG00005050037	miRNA gene	Chr15:71560626-71560720 (+)

Homology

• Gene Tree
  Gm54686
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076923 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076923	Ensembl Gene Model | MGI Sequence Detail	95	C57BL/6J
transcript	ENSMUST00020182266	Ensembl | MGI Sequence Detail	95	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54686:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131561	Chr15:74435232-74435241 (+)	-433 bp
Tssr131562	Chr15:74435348-74435396 (+)	-298 bp
Tssr4625	Chr15:74435400-74435410 (+)	-265 bp
Tssr131563	Chr15:74435519-74435545 (+)	-138 bp
Tssr131564	Chr15:74435587-74435674 (+)	-39 bp