Gm54685 Gene Detail

Summary

• Symbol
  Gm54685
• Name
  predicted gene, 54685

• Feature Type
  miRNA gene
• IDs
  MGI:6845848
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:122808908-122809017 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845848	miRNA gene	Chr3:122808908-122809017 (-)
129S1/SvImJ	ENSMUSG00200050959	miRNA gene	Chr7:90075711-90075820 (+)
129S1/SvImJ	ENSMUSG00200009819	miRNA gene	Chr7:42927540-42927647 (+)
129S1/SvImJ	ENSMUSG00200027399	miRNA gene	Chr3:119504919-119505028 (-)
A/J	ENSMUSG00195011572	miRNA gene	Chr7:47089524-47089631 (+)
A/J	ENSMUSG00195054879	miRNA gene	Chr7:94575441-94575550 (+)
A/J	ENSMUSG00195016109	miRNA gene	Chr3:119718829-119718938 (-)
AKR/J	ENSMUSG00220025737	miRNA gene	Chr3:118102920-118103029 (-)
BALB/cJ	ENSMUSG00180031424	miRNA gene	Chr3:119655566-119655675 (-)
C3H/HeJ	ENSMUSG00175028137	miRNA gene	Chr3:119202113-119202222 (-)
C57BL/6NJ	ENSMUSG00215007978	miRNA gene	Chr3:119948866-119948975 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210048852	miRNA gene	Chr7:91721542-91721651 (+)
CBA/J	ENSMUSG00210003101	miRNA gene	Chr3:119833029-119833138 (-)
CBA/J	ENSMUSG00210044912	miRNA gene	Chr9:118211376-118211485 (+)
CBA/J	ENSMUSG00210005173	miRNA gene	Chr14:81789371-81789480 (+)
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205007894	miRNA gene	Chr3:118766903-118767012 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230004297	miRNA gene	Chr3:122356635-122356744 (-)
NOD/ShiLtJ	ENSMUSG00190034991	miRNA gene	Chr3:120777900-120778009 (-)
NZO/HlLtJ	ENSMUSG00225003475	miRNA gene	Chr3:124836854-124836963 (-)
PWK/PhJ	ENSLUMG00010010064	miRNA gene	Chr3:119206705-119206814 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005007308	miRNA gene	Chr3:120001024-120001133 (-)

Homology

• Gene Tree
  Gm54685
  

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00002075254 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075254	Ensembl Gene Model | MGI Sequence Detail	110	C57BL/6J
transcript	ENSMUST00020181678	Ensembl | MGI Sequence Detail	110	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;