Gm54681 Gene Detail

Summary

• Symbol
  Gm54681
• Name
  predicted gene, 54681

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6845840
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:109732490-109732774 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  139 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845840	unclassified non-coding RNA gene	Chr1:109732490-109732774 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	ENSMUSG00220000341	unclassified non-coding RNA gene	Chr1:106570017-106570301 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215007366	unclassified non-coding RNA gene	Chr1:106728206-106728490 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002848	unclassified non-coding RNA gene	Chr1:106054655-106054939 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185008554	unclassified non-coding RNA gene	Chr1:111047695-111047979 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000000178	unclassified non-coding RNA gene	Chr1:109661133-109661417 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190000629	unclassified non-coding RNA gene	Chr1:106626404-106626688 (+)
NZO/HlLtJ	ENSMUSG00225002968	unclassified non-coding RNA gene	Chr1:114195304-114195588 (+)
PWK/PhJ	ENSLUMG00010000290	unclassified non-coding RNA gene	Chr1:105973771-105974055 (+)
SPRET/EiJ	ENSMSPG00010000579	unclassified non-coding RNA gene	Chr1:108267679-108267963 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm54681
  

Sequences &
Gene Models

• All Sequences
  12

• Ensembl
  ENSMUSG00002076531 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076531	Ensembl Gene Model | MGI Sequence Detail	285	C57BL/6J
transcript	ENSMUST00020182710	Ensembl | MGI Sequence Detail	285	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;