Gm54680 Gene Detail

Summary

• Symbol
  Gm54680
• Name
  predicted gene, 54680

• Feature Type
  miRNA gene
• IDs
  MGI:6845838
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:56479013-56479125 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  86 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845838	miRNA gene	Chr17:56479013-56479125 (-)
129S1/SvImJ	ENSMUSG00200016743	miRNA gene	Chr17:51754113-51754225 (-)
A/J	ENSMUSG00195007144	miRNA gene	Chr17:53141541-53141653 (-)
AKR/J	ENSMUSG00220013375	miRNA gene	Chr17:52190909-52191021 (-)
BALB/cJ	ENSMUSG00180006503	miRNA gene	Chr17:52899171-52899283 (-)
C3H/HeJ	ENSMUSG00175007667	miRNA gene	Chr17:52215229-52215341 (-)
C57BL/6NJ	ENSMUSG00215009167	miRNA gene	Chr17:51829356-51829468 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019619	miRNA gene	Chr17:52947148-52947260 (-)
CBA/J	ENSMUSG00210028874	miRNA gene	Chr17:51982295-51982407 (-)
DBA/2J	ENSMUSG00185009605	miRNA gene	Chr17:54852153-54852265 (-)
FVB/NJ	ENSMUSG00205007248	miRNA gene	Chr17:52529791-52529903 (-)
JF1/MsJ	ENSUMUG00000034003	miRNA gene	Chr17:54530624-54530736 (-)
LP/J	ENSMUSG00230028904	miRNA gene	Chr17:55831537-55831649 (-)
NOD/ShiLtJ	ENSMUSG00190010684	miRNA gene	Chr17:51984996-51985108 (-)
NZO/HlLtJ	ENSMUSG00225043330	miRNA gene	Chr17:58115361-58115473 (-)
PWK/PhJ	ENSLUMG00010009913	miRNA gene	Chr17:51789948-51790060 (-)
SPRET/EiJ	ENSMSPG00010005977	miRNA gene	Chr17:52106264-52106376 (-)
WSB/EiJ	ENSIUOG00005024561	miRNA gene	Chr17:52891636-52891748 (-)

Homology

• Gene Tree
  Gm54680
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075797 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075797	Ensembl Gene Model | MGI Sequence Detail	113	C57BL/6J
transcript	ENSMUST00020183167	Ensembl | MGI Sequence Detail	113	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;