Gm54646 Gene Detail

Summary

• Symbol
  Gm54646
• Name
  predicted gene, 54646

• Feature Type
  miRNA gene
• IDs
  MGI:6845770
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:85169765-85169868 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845770	miRNA gene	Chr10:85169765-85169868 (+)
129S1/SvImJ	ENSMUSG00200030086	miRNA gene	Chr10:81662954-81663057 (+)
A/J	ENSMUSG00195023417	miRNA gene	Chr10:82107654-82107757 (+)
AKR/J	ENSMUSG00220049399	miRNA gene	Chr10:81709992-81710095 (+)
BALB/cJ	ENSMUSG00180035750	miRNA gene	Chr10:82110774-82110877 (+)
C3H/HeJ	ENSMUSG00175023036	miRNA gene	Chr10:81986674-81986777 (+)
C57BL/6NJ	ENSMUSG00215029964	miRNA gene	Chr10:81660254-81660357 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052192	miRNA gene	Chr10:81433317-81433420 (+)
CBA/J	ENSMUSG00210034524	miRNA gene	Chr10:81837401-81837504 (+)
DBA/2J	ENSMUSG00185054227	miRNA gene	Chr10:82052339-82052442 (+)
FVB/NJ	ENSMUSG00205051572	miRNA gene	Chr10:81764578-81764681 (+)
JF1/MsJ	ENSUMUG00000030274	miRNA gene	Chr10:83439444-83439547 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190052516	miRNA gene	Chr10:82093370-82093473 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010024604	miRNA gene	Chr10:81720372-81720475 (+)
SPRET/EiJ	ENSMSPG00010034662	miRNA gene	Chr10:83151124-83151227 (+)
WSB/EiJ	ENSIUOG00005038870	miRNA gene	Chr10:81816070-81816173 (+)

Homology

• Gene Tree
  Gm54646
  

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00002075019 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075019	Ensembl Gene Model | MGI Sequence Detail	104	C57BL/6J
transcript	ENSMUST00020183795	Ensembl | MGI Sequence Detail	104	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;