Gm54643 Gene Detail

Summary

• Symbol
  Gm54643
• Name
  predicted gene, 54643

• Feature Type
  snoRNA gene
• IDs
  MGI:6845764
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:43831012-43831141 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845764	snoRNA gene	Chr8:43831012-43831141 (+)
129S1/SvImJ	ENSMUSG00200008118	snoRNA gene	Chr8:38946594-38946723 (+)
A/J	ENSMUSG00195006085	snoRNA gene	Chr8:39433231-39433360 (+)
AKR/J	ENSMUSG00220006246	snoRNA gene	Chr8:39237347-39237476 (+)
BALB/cJ	ENSMUSG00180003223	snoRNA gene	Chr8:38972671-38972800 (+)
C3H/HeJ	ENSMUSG00175015198	snoRNA gene	Chr8:39097032-39097161 (+)
C57BL/6NJ	ENSMUSG00215009412	snoRNA gene	Chr8:38911417-38911546 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005649	snoRNA gene	Chr8:39000589-39000718 (+)
CBA/J	ENSMUSG00210012844	snoRNA gene	Chr8:38993100-38993229 (+)
DBA/2J	ENSMUSG00185006279	snoRNA gene	Chr8:44844359-44844488 (+)
FVB/NJ	ENSMUSG00205002446	snoRNA gene	Chr8:38130256-38130385 (+)
JF1/MsJ	ENSUMUG00000016509	snoRNA gene	Chr8:46565517-46565646 (+)
LP/J	ENSMUSG00230009934	snoRNA gene	Chr8:48539964-48540093 (+)
NOD/ShiLtJ	ENSMUSG00190015945	snoRNA gene	Chr8:39018924-39019053 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010013446	snoRNA gene	Chr8:38813330-38813459 (+)
SPRET/EiJ	ENSMSPG00010004636	snoRNA gene	Chr8:39685564-39685693 (+)
WSB/EiJ	ENSIUOG00005005821	snoRNA gene	Chr8:39864495-39864624 (+)

Homology

• Gene Tree
  Gm54643
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00002075584 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075584	Ensembl Gene Model | MGI Sequence Detail	130	C57BL/6J
transcript	ENSMUST00020181860	Ensembl | MGI Sequence Detail	130	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;