Gm54616 Gene Detail

Summary

• Symbol
  Gm54616
• Name
  predicted gene, 54616

• Feature Type
  miRNA gene
• IDs
  MGI:6845710
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:91395834-91395978 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845710	miRNA gene	Chr17:91395834-91395978 (+)
129S1/SvImJ	ENSMUSG00200022445	miRNA gene	Chr17:86810149-86810293 (+)
A/J	ENSMUSG00195029421	miRNA gene	Chr17:88212291-88212435 (+)
AKR/J	ENSMUSG00220016274	miRNA gene	Chr17:87228969-87229113 (+)
BALB/cJ	ENSMUSG00180027302	miRNA gene	Chr17:87884297-87884441 (+)
C3H/HeJ	ENSMUSG00175007127	miRNA gene	Chr17:87158586-87158730 (+)
C57BL/6NJ	ENSMUSG00215021059	miRNA gene	Chr17:86846008-86846152 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011784	miRNA gene	Chr17:87697853-87697997 (+)
CBA/J	ENSMUSG00210022248	miRNA gene	Chr17:87013373-87013517 (+)
DBA/2J	ENSMUSG00185020654	miRNA gene	Chr17:89798257-89798401 (+)
FVB/NJ	ENSMUSG00205006096	miRNA gene	Chr17:87628842-87628986 (+)
JF1/MsJ	ENSUMUG00000015525	miRNA gene	Chr17:89578667-89578811 (+)
LP/J	ENSMUSG00230010448	miRNA gene	Chr17:90840534-90840678 (+)
NOD/ShiLtJ	ENSMUSG00190009549	miRNA gene	Chr17:86891132-86891276 (+)
NZO/HlLtJ	ENSMUSG00225029362	miRNA gene	Chr17:93081396-93081540 (+)
PWK/PhJ	ENSLUMG00010033171	miRNA gene	Chr17:86772179-86772323 (+)
SPRET/EiJ	ENSMSPG00010021361	miRNA gene	Chr17:87394824-87394968 (+)
WSB/EiJ	ENSIUOG00005023365	miRNA gene	Chr17:87832516-87832660 (+)

Homology

• Gene Tree
  Gm54616
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075733 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075733	Ensembl Gene Model | MGI Sequence Detail	145	C57BL/6J
transcript	ENSMUST00020181901	Ensembl | MGI Sequence Detail	145	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54616:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146256	Chr17:91395640-91395643 (+)	-192 bp