Gm54604 Gene Detail

Summary

• Symbol
  Gm54604
• Name
  predicted gene, 54604

• Feature Type
  snRNA gene
• IDs
  MGI:6845686
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:47388456-47388559 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845686	snRNA gene	ChrX:47388456-47388559 (+)
129S1/SvImJ	ENSMUSG00200037857	snRNA gene	ChrX:31419948-31420051 (+)
A/J	ENSMUSG00195017415	snRNA gene	ChrX:34021567-34021674 (+)
AKR/J	ENSMUSG00220041357	snRNA gene	ChrX:30909995-30910102 (+)
BALB/cJ	ENSMUSG00180034257	snRNA gene	ChrX:31751480-31751583 (+)
C3H/HeJ	ENSMUSG00175045169	snRNA gene	ChrX:34769850-34769953 (+)
C57BL/6NJ	ENSMUSG00215049013	snRNA gene	ChrX:31763313-31763416 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039284	snRNA gene	ChrX:33845492-33845595 (+)
CBA/J	ENSMUSG00210043049	snRNA gene	ChrX:32013386-32013489 (+)
DBA/2J	ENSMUSG00185035002	snRNA gene	ChrX:42719759-42719862 (+)
FVB/NJ	ENSMUSG00205032107	snRNA gene	ChrX:30699301-30699408 (+)
JF1/MsJ	ENSUMUG00000031683	snRNA gene	ChrX:61774403-61774506 (+)
LP/J	ENSMUSG00230019799	snRNA gene	ChrX:49252384-49252495 (+)
NOD/ShiLtJ	ENSMUSG00190035737	snRNA gene	ChrX:31189291-31189394 (+)
NZO/HlLtJ	ENSMUSG00225043891	snRNA gene	ChrX:54445800-54445903 (+)
PWK/PhJ	ENSLUMG00010042893	snRNA gene	ChrX:31492351-31492454 (+)
SPRET/EiJ	ENSMSPG00010024721	snRNA gene	ChrX:33076011-33076114 (+)
WSB/EiJ	ENSIUOG00005047172	snRNA gene	ChrX:32300679-32300782 (+)

Homology

• Gene Tree
  Gm54604
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076619 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076619	Ensembl Gene Model | MGI Sequence Detail	104	C57BL/6J
transcript	ENSMUST00020183518	Ensembl | MGI Sequence Detail	104	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;