Gm54596 Gene Detail

Summary

• Symbol
  Gm54596
• Name
  predicted gene, 54596

• Feature Type
  rRNA gene
• IDs
  MGI:6845670
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:151086997-151087107 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845670	rRNA gene	ChrX:151086997-151087107 (+)
129S1/SvImJ	ENSMUSG00200034023	rRNA gene	ChrX:127893193-127893303 (+)
A/J	ENSMUSG00195021950	rRNA gene	ChrX:132891284-132891394 (+)
AKR/J	ENSMUSG00220035903	rRNA gene	ChrX:124902008-124902118 (+)
BALB/cJ	ENSMUSG00180040649	rRNA gene	ChrX:128267070-128267180 (+)
C3H/HeJ	ENSMUSG00175030246	rRNA gene	ChrX:132802034-132802144 (+)
C57BL/6NJ	ENSMUSG00215031606	rRNA gene	ChrX:128567198-128567308 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036736	rRNA gene	ChrX:130589870-130589980 (+)
CBA/J	ENSMUSG00210033524	rRNA gene	ChrX:130279372-130279482 (+)
DBA/2J	ENSMUSG00185046396	rRNA gene	ChrX:145100856-145100966 (+)
FVB/NJ	ENSMUSG00205026591	rRNA gene	ChrX:128848746-128848856 (+)
JF1/MsJ	ENSUMUG00000045922	rRNA gene	ChrX:165298202-165298312 (+)
LP/J	ENSMUSG00230013818	rRNA gene	ChrX:151902529-151902639 (+)
NOD/ShiLtJ	ENSMUSG00190040772	rRNA gene	ChrX:129385557-129385667 (+)
NZO/HlLtJ	ENSMUSG00225042540	rRNA gene	ChrX:155399536-155399646 (+)
PWK/PhJ	ENSLUMG00010036233	rRNA gene	ChrX:126822094-126822204 (+)
SPRET/EiJ	ENSMSPG00010040769	rRNA gene	ChrX:131684850-131684960 (+)
WSB/EiJ	ENSIUOG00005041853	rRNA gene	ChrX:129856740-129856850 (+)

Homology

• Gene Tree
  Gm54596
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076760 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076760	Ensembl Gene Model | MGI Sequence Detail	111	C57BL/6J
transcript	ENSMUST00020183268	Ensembl | MGI Sequence Detail	111	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;