Gm54578 Gene Detail

Summary

• Symbol
  Gm54578
• Name
  predicted gene, 54578

• Feature Type
  miRNA gene
• IDs
  MGI:6845634
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:91090026-91090137 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845634	miRNA gene	Chr12:91090026-91090137 (+)
129S1/SvImJ	ENSMUSG00200017959	miRNA gene	Chr12:82911506-82911627 (+)
A/J	ENSMUSG00195035890	miRNA gene	Chr12:85527790-85527911 (+)
AKR/J	ENSMUSG00220018318	miRNA gene	Chr12:83190368-83190479 (+)
BALB/cJ	ENSMUSG00180016816	miRNA gene	Chr12:84565407-84565518 (+)
C3H/HeJ	ENSMUSG00175040394	miRNA gene	Chr12:87298765-87298886 (+)
C57BL/6NJ	ENSMUSG00215021901	miRNA gene	Chr12:83861817-83861928 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006474	miRNA gene	Chr12:83688339-83688716 (+)
CBA/J	ENSMUSG00210019143	miRNA gene	Chr12:84265070-84265181 (+)
DBA/2J	ENSMUSG00185003065	miRNA gene	Chr12:86120210-86120331 (+)
FVB/NJ	ENSMUSG00205000789	miRNA gene	Chr12:83478027-83478144 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230005043	miRNA gene	Chr12:93174837-93174948 (+)
NOD/ShiLtJ	ENSMUSG00190041287	miRNA gene	Chr12:101879019-101879130 (-)
NZO/HlLtJ	ENSMUSG00225034174	miRNA gene	Chr12:94943077-94943188 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010001186	miRNA gene	Chr12:86624906-86624980 (+)
WSB/EiJ	ENSIUOG00005002230	miRNA gene	Chr12:83480722-83480833 (+)

Homology

• Gene Tree
  Gm54578
  

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00002076001 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076001	Ensembl Gene Model | MGI Sequence Detail	112	C57BL/6J
transcript	ENSMUST00020182323	Ensembl | MGI Sequence Detail	112	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;