Gm54575 Gene Detail

Summary

• Symbol
  Gm54575
• Name
  predicted gene, 54575

• Feature Type
  rRNA gene
• IDs
  MGI:6845628
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:46672160-46672237 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  83 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845628	rRNA gene	Chr13:46672160-46672237 (+)
129S1/SvImJ	ENSMUSG00200036189	rRNA gene	Chr13:43921563-43921640 (+)
A/J	ENSMUSG00195031725	rRNA gene	Chr13:42982640-42982717 (+)
AKR/J	ENSMUSG00220009681	rRNA gene	Chr13:42791571-42791648 (+)
BALB/cJ	ENSMUSG00180008882	rRNA gene	Chr13:43289142-43289219 (+)
C3H/HeJ	ENSMUSG00175030797	rRNA gene	Chr13:43253387-43253464 (+)
C57BL/6NJ	ENSMUSG00215008183	rRNA gene	Chr13:43416655-43416732 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031539	rRNA gene	Chr13:43319942-43320019 (+)
CBA/J	ENSMUSG00210027494	rRNA gene	Chr13:43258860-43258937 (+)
DBA/2J	ENSMUSG00185033074	rRNA gene	Chr13:44078929-44079006 (+)
FVB/NJ	ENSMUSG00205012430	rRNA gene	Chr13:43036434-43036511 (+)
JF1/MsJ	ENSUMUG00000019428	rRNA gene	Chr13:43595180-43595257 (+)
LP/J	ENSMUSG00230030704	rRNA gene	Chr13:53391059-53391136 (+)
NOD/ShiLtJ	ENSMUSG00190012304	rRNA gene	Chr13:43477550-43477627 (+)
NZO/HlLtJ	ENSMUSG00225036373	rRNA gene	Chr13:47161168-47161245 (+)
PWK/PhJ	ENSLUMG00010021764	rRNA gene	Chr13:42442143-42442220 (+)
SPRET/EiJ	ENSMSPG00010031974	rRNA gene	Chr13:42547135-42547212 (+)
WSB/EiJ	ENSIUOG00005027624	rRNA gene	Chr13:42629308-42629385 (+)

Homology

• Gene Tree
  Gm54575
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076569 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076569	Ensembl Gene Model | MGI Sequence Detail	78	C57BL/6J
transcript	ENSMUST00020183316	Ensembl | MGI Sequence Detail	78	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;