Gm54565 Gene Detail

Summary

• Symbol
  Gm54565
• Name
  predicted gene, 54565

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6845608
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr3:34692517-34692788 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  68 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845608	unclassified non-coding RNA gene	Chr3:34692517-34692788 (+)
129S1/SvImJ	ENSMUSG00200007120	unclassified non-coding RNA gene	Chr3:31424885-31425156 (+)
A/J	ENSMUSG00195001466	unclassified non-coding RNA gene	Chr3:31424166-31424437 (+)
AKR/J	ENSMUSG00220000955	unclassified non-coding RNA gene	Chr3:31461881-31462152 (+)
BALB/cJ	ENSMUSG00180002848	unclassified non-coding RNA gene	Chr3:31544467-31544738 (+)
C3H/HeJ	ENSMUSG00175003722	unclassified non-coding RNA gene	Chr3:31454439-31454710 (+)
C57BL/6NJ	ENSMUSG00215001611	unclassified non-coding RNA gene	Chr3:31818485-31818756 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026296	unclassified non-coding RNA gene	Chr3:31309752-31310023 (+)
CBA/J	ENSMUSG00210001573	unclassified non-coding RNA gene	Chr3:31502654-31502925 (+)
DBA/2J	ENSMUSG00185001631	unclassified non-coding RNA gene	Chr3:31747721-31747992 (+)
FVB/NJ	ENSMUSG00205008748	unclassified non-coding RNA gene	Chr3:30927138-30927409 (+)
JF1/MsJ	ENSUMUG00000004821	unclassified non-coding RNA gene	Chr3:31191529-31191800 (+)
LP/J	ENSMUSG00230024634	unclassified non-coding RNA gene	Chr3:33667920-33668191 (+)
NOD/ShiLtJ	ENSMUSG00190001656	unclassified non-coding RNA gene	Chr3:31734530-31734801 (+)
NZO/HlLtJ	ENSMUSG00225007327	unclassified non-coding RNA gene	Chr3:36285948-36286219 (+)
PWK/PhJ	ENSLUMG00010038321	unclassified non-coding RNA gene	Chr3:31252339-31252610 (+)
SPRET/EiJ	ENSMSPG00010000649	unclassified non-coding RNA gene	Chr3:31627441-31627712 (+)
WSB/EiJ	ENSIUOG00005013892	unclassified non-coding RNA gene	Chr3:31748575-31748846 (+)

Homology

• Gene Tree
  Gm54565
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075164 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075164	Ensembl Gene Model | MGI Sequence Detail	272	C57BL/6J
transcript	ENSMUST00020183317	Ensembl | MGI Sequence Detail	272	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54565:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28816	Chr3:34692365-34692377 (+)	-146 bp
Tssr28817	Chr3:34692470-34692491 (+)	-36 bp
Tssr28818	Chr3:34692493-34692520 (+)	-10 bp