Gm54564 Gene Detail

Summary

• Symbol
  Gm54564
• Name
  predicted gene, 54564

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6845606
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr3:34614489-34614702 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  63 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845606	unclassified non-coding RNA gene	Chr3:34614489-34614702 (+)
129S1/SvImJ	ENSMUSG00200006250	unclassified non-coding RNA gene	Chr3:31346864-31347077 (+)
A/J	ENSMUSG00195001420	unclassified non-coding RNA gene	Chr3:31344298-31344511 (+)
AKR/J	ENSMUSG00220000730	unclassified non-coding RNA gene	Chr3:31383840-31384053 (+)
BALB/cJ	ENSMUSG00180002873	unclassified non-coding RNA gene	Chr3:31466409-31466622 (+)
C3H/HeJ	ENSMUSG00175003846	unclassified non-coding RNA gene	Chr3:31374571-31374784 (+)
C57BL/6NJ	ENSMUSG00215001562	unclassified non-coding RNA gene	Chr3:31740449-31740662 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025584	unclassified non-coding RNA gene	Chr3:31228138-31228351 (+)
CBA/J	ENSMUSG00210001758	unclassified non-coding RNA gene	Chr3:31422793-31423006 (+)
DBA/2J	ENSMUSG00185001833	unclassified non-coding RNA gene	Chr3:31669692-31669905 (+)
FVB/NJ	ENSMUSG00205008794	unclassified non-coding RNA gene	Chr3:30846972-30847185 (+)
JF1/MsJ	ENSUMUG00000006086	unclassified non-coding RNA gene	Chr3:31111338-31111551 (+)
LP/J	ENSMUSG00230024198	unclassified non-coding RNA gene	Chr3:33589889-33590102 (+)
NOD/ShiLtJ	ENSMUSG00190001428	unclassified non-coding RNA gene	Chr3:31656496-31656709 (+)
NZO/HlLtJ	ENSMUSG00225007123	unclassified non-coding RNA gene	Chr3:36207898-36208111 (+)
PWK/PhJ	ENSLUMG00010037197	unclassified non-coding RNA gene	Chr3:31171847-31172060 (+)
SPRET/EiJ	ENSMSPG00010000952	unclassified non-coding RNA gene	Chr3:31547080-31547293 (+)
WSB/EiJ	ENSIUOG00005014292	unclassified non-coding RNA gene	Chr3:31668646-31668859 (+)

Homology

• Gene Tree
  Gm54564
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075173 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075173	Ensembl Gene Model | MGI Sequence Detail	214	C57BL/6J
transcript	ENSMUST00020182144	Ensembl | MGI Sequence Detail	214	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54564:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28807	Chr3:34614343-34614352 (+)	-141 bp
Tssr28808	Chr3:34614361-34614373 (+)	-122 bp
Tssr28809	Chr3:34614493-34614499 (+)	7 bp