Gm54558 Gene Detail

Summary

• Symbol
  Gm54558
• Name
  predicted gene, 54558

• Feature Type
  miRNA gene
• IDs
  MGI:6845594
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:12695210-12695310 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845594	miRNA gene	Chr15:12695210-12695310 (+)
129S1/SvImJ	ENSMUSG00200033963	miRNA gene	Chr15:9682589-9682689 (+)
A/J	ENSMUSG00195010435	miRNA gene	Chr15:9587132-9587232 (+)
AKR/J	ENSMUSG00220023224	miRNA gene	Chr15:9514648-9514748 (+)
BALB/cJ	ENSMUSG00180036270	miRNA gene	Chr15:9584923-9585023 (+)
C3H/HeJ	ENSMUSG00175032220	miRNA gene	Chr15:9742049-9742149 (+)
C57BL/6NJ	ENSMUSG00215026325	miRNA gene	Chr15:9628423-9628523 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026303	miRNA gene	Chr15:9719205-9719304 (+)
CAST/EiJ	ENSTCUG00005034509	miRNA gene	Chr3:114285440-114285535 (-)
CBA/J	ENSMUSG00210025456	miRNA gene	Chr15:9727118-9727218 (+)
DBA/2J	ENSMUSG00185032318	miRNA gene	Chr15:9684185-9684285 (+)
FVB/NJ	ENSMUSG00205032125	miRNA gene	Chr15:9568152-9568252 (+)
JF1/MsJ	ENSUMUG00000036158	miRNA gene	Chr15:9801424-9801523 (+)
LP/J	ENSMUSG00230016114	miRNA gene	Chr15:13175570-13175670 (+)
NOD/ShiLtJ	ENSMUSG00190010098	miRNA gene	Chr15:9653483-9653583 (+)
NZO/HlLtJ	ENSMUSG00225024237	miRNA gene	Chr15:13406959-13407059 (+)
PWK/PhJ	ENSLUMG00010036656	miRNA gene	Chr15:9850513-9850612 (+)
SPRET/EiJ	ENSMSPG00010035197	miRNA gene	Chr15:9875415-9875515 (+)
WSB/EiJ	ENSIUOG00005030172	miRNA gene	Chr15:9655519-9655619 (+)

Homology

• Gene Tree
  Gm54558
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00002076925 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076925	Ensembl Gene Model | MGI Sequence Detail	101	C57BL/6J
transcript	ENSMUST00020182965	Ensembl | MGI Sequence Detail	101	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;