Gm54552 Gene Detail

Summary

• Symbol
  Gm54552
• Name
  predicted gene, 54552

• Feature Type
  miRNA gene
• IDs
  MGI:6845582
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:70124920-70125029 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  33

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845582	miRNA gene	Chr6:70124920-70125029 (-)
129S1/SvImJ	ENSMUSG00200013798	miRNA gene	Chr6:67030244-67030353 (-)
A/J	ENSMUSG00195047643	miRNA gene	Chr6:66789913-66790022 (-)
A/J	ENSMUSG00195019959	miRNA gene	Chr12:37573009-37573118 (+)
A/J	ENSMUSG00195018068	miRNA gene	Chr4:15485469-15485578 (+)
AKR/J	ENSMUSG00220045790	miRNA gene	Chr6:65891048-65891085 (-)
BALB/cJ	ENSMUSG00180040317	miRNA gene	Chr6:67145819-67145928 (-)
C3H/HeJ	ENSMUSG00175013317	miRNA gene	Chr6:110309982-110310091 (+)
C57BL/6NJ	ENSMUSG00215014356	miRNA gene	Chr12:35953834-35953943 (+)
C57BL/6NJ	ENSMUSG00215044571	miRNA gene	Chr6:67117612-67117721 (-)
C57BL/6NJ	ENSMUSG00215011646	miRNA gene	Chr4:15107059-15107168 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039301	miRNA gene	Chr6:67305256-67305363 (-)
CBA/J	ENSMUSG00210045053	miRNA gene	Chr6:66937589-66937698 (-)
CBA/J	ENSMUSG00210001945	miRNA gene	Chr4:15182097-15182206 (+)
CBA/J	ENSMUSG00210016373	miRNA gene	Chr12:36104414-36104523 (+)
DBA/2J	ENSMUSG00185043664	miRNA gene	Chr6:67502823-67502932 (-)
FVB/NJ	ENSMUSG00205001659	miRNA gene	Chr12:35966924-35967033 (+)
FVB/NJ	ENSMUSG00205041292	miRNA gene	Chr6:66486012-66486121 (-)
JF1/MsJ	ENSUMUG00000047029	miRNA gene	Chr6:66614575-66614612 (-)
LP/J	ENSMUSG00230030128	miRNA gene	Chr6:68623093-68623202 (-)
LP/J	ENSMUSG00230010884	miRNA gene	Chr12:45065839-45065948 (+)
LP/J	ENSMUSG00230008152	miRNA gene	Chr13:11137443-11137552 (-)
NOD/ShiLtJ	ENSMUSG00190043489	miRNA gene	Chr6:66556198-66556305 (-)
NZO/HlLtJ	ENSMUSG00225034989	miRNA gene	Chr13:5024590-5024699 (-)
NZO/HlLtJ	ENSMUSG00225021181	miRNA gene	Chr6:70596991-70597100 (-)
PWK/PhJ	ENSLUMG00010013468	miRNA gene	Chr13:65397967-65398075 (-)
PWK/PhJ	ENSLUMG00010052527	miRNA gene	Chr7:10305229-10305338 (+)
PWK/PhJ	ENSLUMG00010023822	miRNA gene	Chr6:65894416-65894526 (-)
SPRET/EiJ	ENSMSPG00010028310	miRNA gene	Chr6:67935372-67935481 (-)
WSB/EiJ	ENSIUOG00005011761	miRNA gene	Chr1:4118141-4118248 (+)
WSB/EiJ	ENSIUOG00005016841	miRNA gene	Chr3:62286471-62286580 (+)
WSB/EiJ	ENSIUOG00005025733	miRNA gene	Chr6:67763340-67763449 (-)
WSB/EiJ	ENSIUOG00005003972	miRNA gene	Chr1:42665402-42665510 (-)

Homology

• Gene Tree
  Gm54552
  

Sequences &
Gene Models

• All Sequences
  35

• Ensembl
  ENSMUSG00002075740 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075740	Ensembl Gene Model | MGI Sequence Detail	110	C57BL/6J
transcript	ENSMUST00020182750	Ensembl | MGI Sequence Detail	110	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;