Gm54549 Gene Detail

Summary

• Symbol
  Gm54549
• Name
  predicted gene, 54549

• Feature Type
  miRNA gene
• IDs
  MGI:6845576
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:119631553-119631673 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  44 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845576	miRNA gene	Chr3:119631553-119631673 (+)
129S1/SvImJ	ENSMUSG00200026615	miRNA gene	Chr3:116323648-116323768 (+)
A/J	ENSMUSG00195017243	miRNA gene	Chr3:116553910-116554030 (+)
AKR/J	ENSMUSG00220026882	miRNA gene	Chr3:114942646-114942766 (+)
BALB/cJ	ENSMUSG00180029833	miRNA gene	Chr3:116495680-116495800 (+)
C3H/HeJ	ENSMUSG00175027056	miRNA gene	Chr3:116036346-116036466 (+)
C57BL/6NJ	ENSMUSG00215007409	miRNA gene	Chr3:116759011-116759131 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033036	miRNA gene	Chr3:117040220-117040267 (+)
CBA/J	ENSMUSG00210003069	miRNA gene	Chr3:116673973-116674093 (+)
DBA/2J	ENSMUSG00185007658	miRNA gene	Chr3:117241354-117241474 (+)
FVB/NJ	ENSMUSG00205008155	miRNA gene	Chr3:115610587-115610707 (+)
JF1/MsJ	ENSUMUG00000003108	miRNA gene	Chr3:116121819-116121866 (+)
LP/J	ENSMUSG00230012313	miRNA gene	Chr3:119176151-119176271 (+)
NOD/ShiLtJ	ENSMUSG00190037840	miRNA gene	Chr3:117624726-117624846 (+)
NZO/HlLtJ	ENSMUSG00225003882	miRNA gene	Chr3:121669484-121669604 (+)
PWK/PhJ	ENSLUMG00010045978	miRNA gene	Chr2:31914004-31914130 (-)
SPRET/EiJ	ENSMSPG00010031247	miRNA gene	Chr3:116713164-116713266 (+)
WSB/EiJ	ENSIUOG00005007273	miRNA gene	Chr3:116824963-116825083 (+)

Homology

• Gene Tree
  Gm54549
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076177 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076177	Ensembl Gene Model | MGI Sequence Detail	121	C57BL/6J
transcript	ENSMUST00020181914	Ensembl | MGI Sequence Detail	121	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;