Gm54548 Gene Detail

Summary

• Symbol
  Gm54548
• Name
  predicted gene, 54548

• Feature Type
  miRNA gene
• IDs
  MGI:6845574
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:119625586-119625706 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845574	miRNA gene	Chr3:119625586-119625706 (+)
129S1/SvImJ	ENSMUSG00200026605	miRNA gene	Chr3:116317680-116317800 (+)
A/J	ENSMUSG00195017228	miRNA gene	Chr3:116547943-116548063 (+)
AKR/J	ENSMUSG00220026865	miRNA gene	Chr3:114936679-114936799 (+)
BALB/cJ	ENSMUSG00180029821	miRNA gene	Chr3:116489713-116489833 (+)
C3H/HeJ	ENSMUSG00175027041	miRNA gene	Chr3:116030379-116030499 (+)
C57BL/6NJ	ENSMUSG00215007393	miRNA gene	Chr3:116753044-116753164 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033061	miRNA gene	Chr3:117035626-117035708 (+)
CBA/J	ENSMUSG00210003068	miRNA gene	Chr3:116668006-116668126 (+)
DBA/2J	ENSMUSG00185007654	miRNA gene	Chr3:117235387-117235507 (+)
FVB/NJ	ENSMUSG00205008148	miRNA gene	Chr3:115604620-115604740 (+)
JF1/MsJ	ENSUMUG00000003116	miRNA gene	Chr3:116117291-116117421 (+)
LP/J	ENSMUSG00230012583	miRNA gene	Chr3:119170183-119170303 (+)
NOD/ShiLtJ	ENSMUSG00190037789	miRNA gene	Chr3:117618759-117618879 (+)
NZO/HlLtJ	ENSMUSG00225003995	miRNA gene	Chr3:121663517-121663637 (+)
PWK/PhJ	ENSLUMG00010045993	miRNA gene	Chr2:31919984-31920110 (-)
SPRET/EiJ	ENSMSPG00010031340	miRNA gene	Chr3:116708175-116708250 (+)
WSB/EiJ	ENSIUOG00005007270	miRNA gene	Chr3:116818996-116819116 (+)

Homology

• Gene Tree
  Gm54548
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076635 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076635	Ensembl Gene Model | MGI Sequence Detail	121	C57BL/6J
transcript	ENSMUST00020183703	Ensembl | MGI Sequence Detail	121	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;