Gm54546 Pseudogene Detail

Summary

• Symbol
  Gm54546
• Name
  predicted gene, 54546

• Feature Type
  pseudogene
• IDs
  MGI:6845571
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:88307662-88308729 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  27

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845571	pseudogene	Chr12:88307662-88308729 (-)
129S1/SvImJ	ENSMUSG00200050643	pseudogene	Chr12:80066544-80067613 (-)
A/J	ENSMUSG00195036011	pseudogene	Chr12:82725951-82727020 (-)
AKR/J	ENSMUSG00220049921	pseudogene	Chr12:80382962-80384031 (-)
BALB/cJ	ENSMUSG00180016901	pseudogene	Chr12:81649558-81650614 (-)
BALB/cJ	ENSMUSG00180016322	pseudogene	Chr12:81879188-81880255 (-)
C3H/HeJ	ENSMUSG00175038127	pseudogene	Chr12:84493833-84494902 (-)
C57BL/6NJ	ENSMUSG00215047793	pseudogene	Chr12:80833580-80834636 (-)
C57BL/6NJ	ENSMUSG00215046770	pseudogene	Chr12:81076462-81077529 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035726	pseudogene	Chr12:80768183-80769238 (-)
CAST/EiJ	ENSTCUG00005033591	pseudogene	Chr12:80948210-80949276 (-)
CBA/J	ENSMUSG00210018829	pseudogene	Chr12:81469444-81470513 (-)
DBA/2J	ENSMUSG00185002754	pseudogene	Chr12:83321295-83322364 (-)
FVB/NJ	ENSMUSG00205041955	pseudogene	Chr12:80682842-80683911 (-)
JF1/MsJ	ENSUMUG00000048534	pseudogene	Chr12:88002714-88003778 (-)
JF1/MsJ	ENSUMUG00000053508	pseudogene	Chr12:87628332-87629388 (-)
JF1/MsJ	ENSUMUG00000053594	pseudogene	Chr12:87877084-87878140 (-)
JF1/MsJ	ENSUMUG00000053349	pseudogene	Chr12:87243234-87244290 (+)
LP/J	ENSMUSG00230047491	pseudogene	Chr12:90383381-90384450 (-)
NOD/ShiLtJ	ENSMUSG00190038106	pseudogene	Chr12:104671180-104672246 (+)
NZO/HlLtJ	ENSMUSG00225053672	pseudogene	Chr12:91942502-91943558 (-)
NZO/HlLtJ	ENSMUSG00225053053	pseudogene	Chr12:92172100-92173167 (-)
PWK/PhJ	ENSLUMG00010003846	pseudogene	Chr12:81207284-81208340 (-)
PWK/PhJ	ENSLUMG00010003845	pseudogene	Chr12:80934532-80935588 (+)
PWK/PhJ	ENSLUMG00010003646	pseudogene	Chr12:81487881-81488945 (-)
SPRET/EiJ	ENSMSPG00010001143	pseudogene	Chr12:83827033-83828053 (-)
WSB/EiJ	ENSIUOG00005045315	pseudogene	Chr12:80701201-80702270 (-)

Homology

• Gene Tree
  Gm54546
  

Sequences &
Gene Models

• All Sequences
  29

• Ensembl
  ENSMUSG00000118658 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118658	Ensembl Gene Model | MGI Sequence Detail	1068	C57BL/6J
transcript	ENSMUST00000239446	Ensembl | MGI Sequence Detail	166	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;