Gm54541 Gene Detail

Summary

• Symbol
  Gm54541
• Name
  predicted gene, 54541

• Feature Type
  snoRNA gene
• IDs
  MGI:6845561
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:42252584-42252661 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845561	snoRNA gene	Chr6:42252584-42252661 (+)
129S1/SvImJ	ENSMUSG00200046533	snoRNA gene	Chr6:39311750-39311827 (+)
A/J	ENSMUSG00195045130	snoRNA gene	Chr6:39280531-39280608 (+)
AKR/J	ENSMUSG00220009747	snoRNA gene	Chr6:38882547-38882624 (+)
BALB/cJ	ENSMUSG00180048275	snoRNA gene	Chr6:39408919-39408996 (+)
C3H/HeJ	ENSMUSG00175049454	snoRNA gene	Chr6:39235987-39236064 (+)
C57BL/6NJ	ENSMUSG00215049086	snoRNA gene	Chr6:39361891-39361968 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037369	snoRNA gene	Chr6:38815369-38815446 (+)
CBA/J	ENSMUSG00210052348	snoRNA gene	Chr6:39287703-39287780 (+)
DBA/2J	ENSMUSG00185049422	snoRNA gene	Chr6:39390177-39390254 (+)
FVB/NJ	ENSMUSG00205051071	snoRNA gene	Chr6:39292821-39292898 (+)
JF1/MsJ	ENSUMUG00000026949	snoRNA gene	Chr6:38911606-38911683 (+)
LP/J	ENSMUSG00230043308	snoRNA gene	Chr6:40313839-40313916 (+)
NOD/ShiLtJ	ENSMUSG00190049150	snoRNA gene	Chr6:39196106-39196183 (+)
NZO/HlLtJ	ENSMUSG00225020031	snoRNA gene	Chr6:42296502-42296579 (+)
PWK/PhJ	ENSLUMG00010047706	snoRNA gene	Chr6:38741451-38741528 (+)
SPRET/EiJ	ENSMSPG00010034408	snoRNA gene	Chr6:39432143-39432220 (+)
WSB/EiJ	ENSIUOG00005035061	snoRNA gene	Chr6:39527224-39527301 (+)

Homology

• Gene Tree
  Gm54541
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075822 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075822	Ensembl Gene Model | MGI Sequence Detail	78	C57BL/6J
transcript	ENSMUST00020181988	Ensembl | MGI Sequence Detail	78	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;