Gm54540 Gene Detail

Summary

• Symbol
  Gm54540
• Name
  predicted gene, 54540

• Feature Type
  rRNA gene
• IDs
  MGI:6845559
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:25737800-25737905 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845559	rRNA gene	Chr12:25737800-25737905 (+)
129S1/SvImJ	ENSMUSG00200024353	rRNA gene	Chr12:17493314-17493419 (+)
A/J	ENSMUSG00195019891	rRNA gene	Chr12:20222333-20222438 (+)
AKR/J	ENSMUSG00220027755	rRNA gene	Chr12:18172184-18172289 (+)
BALB/cJ	ENSMUSG00180010799	rRNA gene	Chr12:19164991-19165096 (+)
C3H/HeJ	ENSMUSG00175023068	rRNA gene	Chr12:22215974-22216079 (+)
C57BL/6NJ	ENSMUSG00215005908	rRNA gene	Chr12:18633659-18633764 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006380	rRNA gene	Chr12:19021265-19021370 (+)
CBA/J	ENSMUSG00210007844	rRNA gene	Chr12:18702162-18702267 (+)
DBA/2J	ENSMUSG00185015270	rRNA gene	Chr12:20726748-20726853 (+)
FVB/NJ	ENSMUSG00205001783	rRNA gene	Chr12:18800516-18800621 (+)
JF1/MsJ	ENSUMUG00000006316	rRNA gene	Chr12:24943723-24943828 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190014594	rRNA gene	Chr12:17671862-17671967 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010004796	rRNA gene	Chr12:19220160-19220265 (+)
SPRET/EiJ	ENSMSPG00010003240	rRNA gene	Chr12:19486399-19486504 (+)
WSB/EiJ	ENSIUOG00005001743	rRNA gene	Chr12:18366714-18366819 (+)

Homology

• Gene Tree
  Gm54540
  

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00002074929 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002074929	Ensembl Gene Model | MGI Sequence Detail	106	C57BL/6J
transcript	ENSMUST00020183757	Ensembl | MGI Sequence Detail	106	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;