Gm54539 Gene Detail

Summary

• Symbol
  Gm54539
• Name
  predicted gene, 54539

• Feature Type
  rRNA gene
• IDs
  MGI:6845557
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:150768306-150768412 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  88 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845557	rRNA gene	ChrX:150768306-150768412 (+)
129S1/SvImJ	ENSMUSG00200032860	rRNA gene	ChrX:127574046-127574152 (+)
A/J	ENSMUSG00195021730	rRNA gene	ChrX:132571378-132571484 (+)
AKR/J	ENSMUSG00220035079	rRNA gene	ChrX:124582214-124582320 (+)
BALB/cJ	ENSMUSG00180041875	rRNA gene	ChrX:127947150-127947256 (+)
C3H/HeJ	ENSMUSG00175030702	rRNA gene	ChrX:132482694-132482800 (+)
C57BL/6NJ	ENSMUSG00215032712	rRNA gene	ChrX:128247783-128247889 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036949	rRNA gene	ChrX:130269159-130269265 (+)
CBA/J	ENSMUSG00210033443	rRNA gene	ChrX:129960024-129960130 (+)
DBA/2J	ENSMUSG00185045525	rRNA gene	ChrX:144781496-144781602 (+)
FVB/NJ	ENSMUSG00205026824	rRNA gene	ChrX:128529407-128529513 (+)
JF1/MsJ	ENSUMUG00000045639	rRNA gene	ChrX:164972811-164972917 (+)
LP/J	ENSMUSG00230032524	rRNA gene	ChrX:151583393-151583499 (+)
NOD/ShiLtJ	ENSMUSG00190038433	rRNA gene	ChrX:129065669-129065775 (+)
NZO/HlLtJ	ENSMUSG00225042242	rRNA gene	ChrX:155080401-155080507 (+)
PWK/PhJ	ENSLUMG00010034923	rRNA gene	ChrX:126503647-126503753 (+)
SPRET/EiJ	ENSMSPG00010041189	rRNA gene	ChrX:131367456-131367562 (+)
WSB/EiJ	ENSIUOG00005040616	rRNA gene	ChrX:129536759-129536865 (+)

Homology

• Gene Tree
  Gm54539
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076803 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076803	Ensembl Gene Model | MGI Sequence Detail	107	C57BL/6J
transcript	ENSMUST00020182499	Ensembl | MGI Sequence Detail	107	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;