Gm54518 Gene Detail

Summary

• Symbol
  Gm54518
• Name
  predicted gene, 54518

• Feature Type
  miRNA gene
• IDs
  MGI:6845515
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:23935361-23935498 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845515	miRNA gene	Chr13:23935361-23935498 (-)
129S1/SvImJ	ENSMUSG00200030798	miRNA gene	Chr13:21065983-21066120 (-)
A/J	ENSMUSG00195041453	miRNA gene	Chr13:20215164-20215301 (-)
AKR/J	ENSMUSG00220034393	miRNA gene	Chr13:20036317-20036454 (-)
BALB/cJ	ENSMUSG00180023348	miRNA gene	Chr13:20533685-20533822 (-)
C3H/HeJ	ENSMUSG00175035796	miRNA gene	Chr13:20539896-20540033 (-)
C57BL/6NJ	ENSMUSG00215012602	miRNA gene	Chr13:20692590-20692727 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011339	miRNA gene	Chr13:20712892-20713029 (-)
CBA/J	ENSMUSG00210026843	miRNA gene	Chr13:20495190-20495327 (-)
DBA/2J	ENSMUSG00185020720	miRNA gene	Chr13:21317182-21317319 (-)
FVB/NJ	ENSMUSG00205030556	miRNA gene	Chr13:20335593-20335730 (-)
JF1/MsJ	ENSUMUG00000017297	miRNA gene	Chr13:20981142-20981279 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190040753	miRNA gene	Chr13:20311731-20311868 (-)
NZO/HlLtJ	ENSMUSG00225045731	miRNA gene	Chr13:24429605-24429742 (-)
PWK/PhJ	ENSLUMG00010034190	miRNA gene	Chr13:19872235-19872372 (-)
SPRET/EiJ	ENSMSPG00010021543	miRNA gene	Chr13:19649285-19649422 (-)
WSB/EiJ	ENSIUOG00005037875	miRNA gene	Chr13:19837010-19837147 (-)

Homology

• Gene Tree
  Gm54518
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00002076907 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076907	Ensembl Gene Model | MGI Sequence Detail	138	C57BL/6J
transcript	ENSMUST00020182756	Ensembl | MGI Sequence Detail	138	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54518:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121747	Chr13:23936178-23936193 (-)	-688 bp