Gm54515 Pseudogene Detail

Summary

• Symbol
  Gm54515
• Name
  predicted gene, 54515

• Feature Type
  pseudogene
• IDs
  MGI:6845510
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:142119094-142145191 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  758 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845510	pseudogene	Chr6:142119094-142145191 (+)
129S1/SvImJ	ENSMUSG00200033945	pseudogene	Chr6:139659440-139685508 (+)
A/J	ENSMUSG00195008412	pseudogene	Chr6:138565710-138591818 (+)
AKR/J	ENSMUSG00220033469	pseudogene	Chr6:136792655-136818753 (+)
BALB/cJ	ENSMUSG00180017517	pseudogene	Chr6:138693314-138719400 (+)
C3H/HeJ	ENSMUSG00175035869	pseudogene	Chr6:138592664-138618755 (+)
C57BL/6NJ	ENSMUSG00215029224	pseudogene	Chr6:138763799-138789910 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037188	pseudogene	Chr6:139436002-139462401 (+)
CBA/J	ENSMUSG00210005581	pseudogene	Chr6:138655392-138681435 (+)
DBA/2J	ENSMUSG00185022908	pseudogene	Chr6:139305859-139331939 (+)
FVB/NJ	ENSMUSG00205034047	pseudogene	Chr6:137683128-137709127 (+)
JF1/MsJ	ENSUMUG00000011846	pseudogene	Chr6:137962525-137988666 (+)
LP/J	ENSMUSG00230010043	pseudogene	Chr6:140441323-140467405 (+)
NOD/ShiLtJ	ENSMUSG00190006818	pseudogene	Chr6:139132255-139158233 (+)
NZO/HlLtJ	ENSMUSG00225013987	pseudogene	Chr6:143295964-143322036 (+)
PWK/PhJ	ENSLUMG00010034492	pseudogene	Chr6:137038844-137064917 (+)
SPRET/EiJ	ENSMSPG00010035843	pseudogene	Chr6:140965635-141000629 (+)
WSB/EiJ	ENSIUOG00005023612	pseudogene	Chr6:139374859-139400888 (+)

Homology

• Gene Tree
  Gm54515
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118597 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118597	Ensembl Gene Model | MGI Sequence Detail	26098	C57BL/6J
transcript	ENSMUST00000239318	Ensembl | MGI Sequence Detail	476	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;