Gm54509 Gene Detail

Summary

• Symbol
  Gm54509
• Name
  predicted gene, 54509

• Feature Type
  snoRNA gene
• IDs
  MGI:6845498
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:87484452-87484587 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845498	snoRNA gene	Chr12:87484452-87484587 (-)
129S1/SvImJ	ENSMUSG00200051837	snoRNA gene	Chr12:79500648-79500783 (-)
A/J	ENSMUSG00195033995	snoRNA gene	Chr12:82120469-82120604 (-)
AKR/J	ENSMUSG00220049376	snoRNA gene	Chr12:79916332-79916467 (-)
BALB/cJ	ENSMUSG00180024511	snoRNA gene	Chr12:81157732-81157867 (-)
C3H/HeJ	ENSMUSG00175040840	snoRNA gene	Chr12:84251068-84251203 (-)
C57BL/6NJ	ENSMUSG00215047544	snoRNA gene	Chr12:80464199-80464334 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034091	snoRNA gene	Chr12:80442109-80442244 (-)
CBA/J	ENSMUSG00210046209	snoRNA gene	Chr12:80669523-80669658 (-)
DBA/2J	ENSMUSG00185002664	snoRNA gene	Chr12:82521449-82521584 (-)
FVB/NJ	ENSMUSG00205041892	snoRNA gene	Chr12:80341072-80341207 (-)
JF1/MsJ	ENSUMUG00000049163	snoRNA gene	Chr12:86542876-86543011 (-)
LP/J	ENSMUSG00230045980	snoRNA gene	Chr12:89583532-89583667 (-)
NOD/ShiLtJ	ENSMUSG00190048210	snoRNA gene	Chr12:79738822-79738957 (-)
NZO/HlLtJ	ENSMUSG00225052863	snoRNA gene	Chr12:91620709-91620844 (-)
PWK/PhJ	ENSLUMG00010030631	snoRNA gene	Chr12:80553866-80554001 (-)
SPRET/EiJ	ENSMSPG00010001169	snoRNA gene	Chr12:82368270-82368405 (-)
WSB/EiJ	ENSIUOG00005046519	snoRNA gene	Chr12:80390757-80390892 (-)

Homology

• Gene Tree
  Gm54509
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076596 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076596	Ensembl Gene Model | MGI Sequence Detail	136	C57BL/6J
transcript	ENSMUST00020182870	Ensembl | MGI Sequence Detail	136	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;