Gm54500 Gene Detail

Summary

• Symbol
  Gm54500
• Name
  predicted gene, 54500

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6845480
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:141860804-141861018 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845480	unclassified non-coding RNA gene	Chr6:141860804-141861018 (-)
129S1/SvImJ	ENSMUSG00200033665	unclassified non-coding RNA gene	Chr6:139402757-139402971 (-)
A/J	ENSMUSG00195008286	unclassified non-coding RNA gene	Chr6:138306957-138307171 (-)
AKR/J	ENSMUSG00220032217	unclassified non-coding RNA gene	Chr6:136533923-136534137 (-)
BALB/cJ	ENSMUSG00180017734	unclassified non-coding RNA gene	Chr6:138431949-138432163 (-)
C3H/HeJ	ENSMUSG00175036643	unclassified non-coding RNA gene	Chr6:138333953-138334168 (-)
C57BL/6NJ	ENSMUSG00215031564	unclassified non-coding RNA gene	Chr6:138505077-138505291 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037242	unclassified non-coding RNA gene	Chr6:139132568-139132784 (-)
CBA/J	ENSMUSG00210005441	unclassified non-coding RNA gene	Chr6:138396245-138396459 (-)
DBA/2J	ENSMUSG00185022877	unclassified non-coding RNA gene	Chr6:139047148-139047362 (-)
FVB/NJ	ENSMUSG00205030815	unclassified non-coding RNA gene	Chr6:137436554-137436771 (-)
JF1/MsJ	ENSUMUG00000010471	unclassified non-coding RNA gene	Chr6:137703849-137704063 (-)
LP/J	ENSMUSG00230009968	unclassified non-coding RNA gene	Chr6:140197622-140197840 (-)
NOD/ShiLtJ	ENSMUSG00190007031	unclassified non-coding RNA gene	Chr6:138888605-138888821 (-)
NZO/HlLtJ	ENSMUSG00225013997	unclassified non-coding RNA gene	Chr6:143037241-143037455 (-)
PWK/PhJ	ENSLUMG00010036479	unclassified non-coding RNA gene	Chr6:136792639-136792853 (-)
SPRET/EiJ	ENSMSPG00010037001	unclassified non-coding RNA gene	Chr6:140699427-140699642 (-)
WSB/EiJ	ENSIUOG00005023956	unclassified non-coding RNA gene	Chr6:139123796-139124014 (-)

Homology

• Gene Tree
  Gm54500
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002074877 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002074877	Ensembl Gene Model | MGI Sequence Detail	215	C57BL/6J
transcript	ENSMUST00020183617	Ensembl | MGI Sequence Detail	215	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;