Gm54499 Gene Detail

Summary

• Symbol
  Gm54499
• Name
  predicted gene, 54499

• Feature Type
  miRNA gene
• IDs
  MGI:6845478
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:87313632-87313707 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  83 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845478	miRNA gene	Chr12:87313632-87313707 (+)
129S1/SvImJ	ENSMUSG00200051520	miRNA gene	Chr12:79329970-79330045 (+)
A/J	ENSMUSG00195034156	miRNA gene	Chr12:81949778-81949853 (+)
AKR/J	ENSMUSG00220050044	miRNA gene	Chr12:79745640-79745715 (+)
BALB/cJ	ENSMUSG00180023785	miRNA gene	Chr12:80986858-80986933 (+)
C3H/HeJ	ENSMUSG00175038759	miRNA gene	Chr12:84080387-84080462 (+)
C57BL/6NJ	ENSMUSG00215046720	miRNA gene	Chr12:80293322-80293397 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033120	miRNA gene	Chr12:80269669-80269744 (+)
CBA/J	ENSMUSG00210047365	miRNA gene	Chr12:80498855-80498930 (+)
DBA/2J	ENSMUSG00185003048	miRNA gene	Chr12:82350762-82350837 (+)
FVB/NJ	ENSMUSG00205040766	miRNA gene	Chr12:80164933-80165008 (+)
JF1/MsJ	ENSUMUG00000049983	miRNA gene	Chr12:86366832-86366907 (+)
LP/J	ENSMUSG00230045961	miRNA gene	Chr12:89412868-89412943 (+)
NOD/ShiLtJ	ENSMUSG00190048301	miRNA gene	Chr12:79562025-79562100 (+)
NZO/HlLtJ	ENSMUSG00225052851	miRNA gene	Chr12:91449843-91449918 (+)
PWK/PhJ	ENSLUMG00010029589	miRNA gene	Chr12:80378074-80378149 (+)
SPRET/EiJ	ENSMSPG00010001165	miRNA gene	Chr12:82194400-82194475 (+)
WSB/EiJ	ENSIUOG00005045548	miRNA gene	Chr12:80218206-80218281 (+)

Homology

• Gene Tree
  Gm54499
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075882 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075882	Ensembl Gene Model | MGI Sequence Detail	76	C57BL/6J
transcript	ENSMUST00020182244	Ensembl | MGI Sequence Detail	76	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54499:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114521	Chr12:87313470-87313534 (+)	-130 bp