Gm54486 Gene Detail

Summary

• Symbol
  Gm54486
• Name
  predicted gene, 54486

• Feature Type
  miRNA gene
• IDs
  MGI:6845452
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:122177096-122177205 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  50 from dbSNP Build 142
• Strain Annotations
  35

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845452	miRNA gene	Chr6:122177096-122177205 (+)
129S1/SvImJ	ENSMUSG00200002639	miRNA gene	Chr2:91729417-91729526 (+)
129S1/SvImJ	ENSMUSG00200051104	miRNA gene	Chr6:119346337-119346446 (+)
A/J	ENSMUSG00195047356	miRNA gene	Chr13:58221599-58221708 (-)
A/J	ENSMUSG00195027238	miRNA gene	Chr5:87275135-87275244 (-)
A/J	ENSMUSG00195047766	miRNA gene	Chr6:118760626-118760735 (+)
AKR/J	ENSMUSG00220047334	miRNA gene	Chr6:64224732-64224842 (+)
AKR/J	ENSMUSG00220032211	miRNA gene	Chr6:117645905-117646014 (+)
BALB/cJ	ENSMUSG00180022009	miRNA gene	Chr2:91762115-91762224 (+)
BALB/cJ	ENSMUSG00180049249	miRNA gene	Chr6:119128279-119128388 (+)
C3H/HeJ	ENSMUSG00175009644	miRNA gene	Chr14:80208073-80208178 (-)
C3H/HeJ	ENSMUSG00175005501	miRNA gene	Chr8:45856111-45856220 (-)
C3H/HeJ	ENSMUSG00175048266	miRNA gene	Chr6:118783525-118783634 (+)
C3H/HeJ	ENSMUSG00175051240	miRNA gene	Chr6:112350259-112350369 (-)
C3H/HeJ	ENSMUSG00175010413	miRNA gene	Chr2:91986495-91986604 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051002	miRNA gene	Chr6:118821012-118821121 (+)
CAST/EiJ	ENSTCUG00005001778	miRNA gene	Chr2:91272079-91272188 (+)
CBA/J	ENSMUSG00210045006	miRNA gene	Chr6:118895148-118895257 (+)
CBA/J	ENSMUSG00210002339	miRNA gene	Chr2:92040561-92040670 (+)
DBA/2J	ENSMUSG00185048898	miRNA gene	Chr6:65460536-65460646 (+)
DBA/2J	ENSMUSG00185050187	miRNA gene	Chr6:119532616-119532725 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000052847	miRNA gene	Chr6:118127822-118127931 (+)
LP/J	ENSMUSG00230008158	miRNA gene	Chr13:13649474-13649583 (-)
LP/J	ENSMUSG00230049573	miRNA gene	Chr6:120743683-120743792 (+)
LP/J	ENSMUSG00230001030	miRNA gene	Chr2:93508878-93508987 (+)
LP/J	ENSMUSG00230030978	miRNA gene	Chr6:66582966-66583076 (+)
NOD/ShiLtJ	ENSMUSG00190024488	miRNA gene	Chr2:91836841-91836950 (+)
NOD/ShiLtJ	ENSMUSG00190050811	miRNA gene	Chr11:118191438-118191547 (-)
NOD/ShiLtJ	ENSMUSG00190052627	miRNA gene	Chr6:118508044-118508153 (+)
NOD/ShiLtJ	ENSMUSG00190000671	miRNA gene	Chr4:24513041-24513150 (-)
NZO/HlLtJ	ENSMUSG00225053997	miRNA gene	Chr2:101430749-101430858 (+)
NZO/HlLtJ	ENSMUSG00225018518	miRNA gene	Chr6:122625221-122625330 (+)
NZO/HlLtJ	ENSMUSG00225018699	miRNA gene	Chr6:129863352-129863461 (+)
PWK/PhJ	ENSLUMG00010050423	miRNA gene	Chr6:117459882-117459991 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005047311	miRNA gene	Chr6:119143634-119143734 (+)

Homology

• Gene Tree
  Gm54486
  

Sequences &
Gene Models

• All Sequences
  37

• Ensembl
  ENSMUSG00002075644 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075644	Ensembl Gene Model | MGI Sequence Detail	110	C57BL/6J
transcript	ENSMUST00020183116	Ensembl | MGI Sequence Detail	110	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;