Gm54485 Gene Detail

Summary

• Symbol
  Gm54485
• Name
  predicted gene, 54485

• Feature Type
  miRNA gene
• IDs
  MGI:6845450
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:22090914-22091023 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  27 from dbSNP Build 142
• Strain Annotations
  55

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845450	miRNA gene	Chr12:22090914-22091023 (+)
129S1/SvImJ	ENSMUSG00200024207	miRNA gene	Chr12:15296042-15296152 (-)
129S1/SvImJ	ENSMUSG00200024621	miRNA gene	Chr12:16143407-16143516 (+)
129S1/SvImJ	ENSMUSG00200024618	miRNA gene	Chr12:15064070-15064179 (-)
A/J	ENSMUSG00195022213	miRNA gene	Chr12:15603907-15604017 (-)
A/J	ENSMUSG00195022131	miRNA gene	Chr12:15080361-15080470 (-)
A/J	ENSMUSG00195020662	miRNA gene	Chr12:16136384-16136493 (-)
A/J	ENSMUSG00195022319	miRNA gene	Chr12:17478706-17478815 (+)
AKR/J	ENSMUSG00220020093	miRNA gene	Chr18:976400-976506 (-)
BALB/cJ	ENSMUSG00180010919	miRNA gene	Chr12:15092262-15092371 (-)
BALB/cJ	ENSMUSG00180010923	miRNA gene	Chr12:15121023-15121129 (-)
BALB/cJ	ENSMUSG00180010961	miRNA gene	Chr12:15615818-15615928 (-)
BALB/cJ	ENSMUSG00180010967	miRNA gene	Chr12:15748988-15749094 (-)
BALB/cJ	ENSMUSG00180009959	miRNA gene	Chr12:17130004-17130113 (+)
BALB/cJ	ENSMUSG00180009954	miRNA gene	Chr12:16694603-16694712 (+)
BALB/cJ	ENSMUSG00180010943	miRNA gene	Chr12:17811778-17811884 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215005828	miRNA gene	Chr12:16060446-16060553 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006410	miRNA gene	Chr12:14690748-14690857 (-)
CAST/EiJ	ENSTCUG00005006587	miRNA gene	Chr12:14723673-14723782 (-)
CBA/J	ENSMUSG00210029494	miRNA gene	Chr16:32946025-32946134 (-)
CBA/J	ENSMUSG00210008713	miRNA gene	Chr12:15106700-15106809 (-)
CBA/J	ENSMUSG00210022054	miRNA gene	Chr18:995453-995562 (-)
CBA/J	ENSMUSG00210007691	miRNA gene	Chr12:16449159-16449269 (-)
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205001752	miRNA gene	Chr12:14829696-14829805 (-)
JF1/MsJ	ENSUMUG00000010590	miRNA gene	Chr12:19624023-19624132 (+)
LP/J	ENSMUSG00230023118	miRNA gene	Chr12:17355963-17356073 (-)
LP/J	ENSMUSG00230008132	miRNA gene	Chr12:26214092-26214198 (+)
LP/J	ENSMUSG00230023303	miRNA gene	Chr12:17883935-17884044 (-)
LP/J	ENSMUSG00230007946	miRNA gene	Chr12:22977466-22977572 (-)
LP/J	ENSMUSG00230008163	miRNA gene	Chr12:26352025-26352131 (+)
LP/J	ENSMUSG00230023115	miRNA gene	Chr12:16861218-16861324 (-)
LP/J	ENSMUSG00230008019	miRNA gene	Chr12:24614822-24614931 (+)
LP/J	ENSMUSG00230007353	miRNA gene	Chr12:23564186-23564295 (-)
LP/J	ENSMUSG00230008138	miRNA gene	Chr12:26245886-26245995 (+)
LP/J	ENSMUSG00230023388	miRNA gene	Chr12:19938840-19938949 (+)
NOD/ShiLtJ	ENSMUSG00190008398	miRNA gene	Chr12:659607-659716 (+)
NZO/HlLtJ	ENSMUSG00225035311	miRNA gene	Chr12:25276753-25276862 (-)
NZO/HlLtJ	ENSMUSG00225035486	miRNA gene	Chr12:28535128-28535234 (+)
NZO/HlLtJ	ENSMUSG00225030418	miRNA gene	Chr12:19460516-19460626 (-)
NZO/HlLtJ	ENSMUSG00225035901	miRNA gene	Chr12:28428982-28429091 (+)
NZO/HlLtJ	ENSMUSG00225035293	miRNA gene	Chr12:24927855-24927961 (-)
NZO/HlLtJ	ENSMUSG00225035470	miRNA gene	Chr12:28397189-28397295 (+)
NZO/HlLtJ	ENSMUSG00225030435	miRNA gene	Chr12:19988505-19988614 (-)
NZO/HlLtJ	ENSMUSG00225035345	miRNA gene	Chr12:25930664-25930770 (+)
NZO/HlLtJ	ENSMUSG00225034403	miRNA gene	Chr12:25514561-25514670 (-)
PWK/PhJ	ENSLUMG00010004648	miRNA gene	Chr12:16969589-16969698 (+)
PWK/PhJ	ENSLUMG00010052202	miRNA gene	Chr12:107234065-107234174 (+)
SPRET/EiJ	ENSMSPG00010002989	miRNA gene	Chr12:16255186-16255295 (-)
SPRET/EiJ	ENSMSPG00010003535	miRNA gene	Chr12:17806133-17806242 (+)
SPRET/EiJ	ENSMSPG00010012303	miRNA gene	Chr18:695347-695456 (-)
WSB/EiJ	ENSIUOG00005028783	miRNA gene	Chr18:894273-894382 (-)
WSB/EiJ	ENSIUOG00005025433	miRNA gene	Chr13:64817895-64818003 (-)
WSB/EiJ	ENSIUOG00005001927	miRNA gene	Chr12:16060691-16060800 (-)
WSB/EiJ	ENSIUOG00005028201	miRNA gene	Chr16:33005394-33005503 (-)
WSB/EiJ	ENSIUOG00005021788	miRNA gene	Chr6:56277525-56277634 (-)

Homology

• Gene Tree
  Gm54485
  

Sequences &
Gene Models

• All Sequences
  57

• Ensembl
  ENSMUSG00002076610 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076610	Ensembl Gene Model | MGI Sequence Detail	110	C57BL/6J
transcript	ENSMUST00020182590	Ensembl | MGI Sequence Detail	110	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;