Gm54480 Gene Detail

Summary

• Symbol
  Gm54480
• Name
  predicted gene, 54480

• Feature Type
  snRNA gene
• IDs
  MGI:6845440
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:16823971-16824065 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845440	snRNA gene	Chr16:16823971-16824065 (-)
129S1/SvImJ	ENSMUSG00200048624	snRNA gene	Chr16:13820505-13820599 (-)
A/J	ENSMUSG00195035564	snRNA gene	Chr16:13377718-13377812 (-)
AKR/J	ENSMUSG00220045497	snRNA gene	Chr16:13694026-13694120 (-)
BALB/cJ	ENSMUSG00180043039	snRNA gene	Chr16:13619004-13619098 (-)
C3H/HeJ	ENSMUSG00175050740	snRNA gene	Chr16:13764023-13764117 (-)
C57BL/6NJ	ENSMUSG00215042914	snRNA gene	Chr16:13485136-13485230 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045402	snRNA gene	Chr16:13680194-13680288 (-)
CBA/J	ENSMUSG00210048008	snRNA gene	Chr16:13780351-13780445 (-)
DBA/2J	ENSMUSG00185034545	snRNA gene	Chr16:13726507-13726601 (-)
FVB/NJ	ENSMUSG00205047434	snRNA gene	Chr16:13734067-13734161 (-)
JF1/MsJ	ENSUMUG00000054273	snRNA gene	Chr16:13811259-13811353 (-)
LP/J	ENSMUSG00230046073	snRNA gene	Chr16:16304420-16304514 (-)
NOD/ShiLtJ	ENSMUSG00190051318	snRNA gene	Chr16:13866438-13866532 (-)
NZO/HlLtJ	ENSMUSG00225032262	snRNA gene	Chr16:19550228-19550322 (-)
PWK/PhJ	ENSLUMG00010050831	snRNA gene	Chr16:13694099-13694193 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005045170	snRNA gene	Chr16:13859181-13859275 (-)

Homology

• Gene Tree
  Gm54480
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00002076351 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076351	Ensembl Gene Model | MGI Sequence Detail	95	C57BL/6J
transcript	ENSMUST00020183264	Ensembl | MGI Sequence Detail	95	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;