Gm54478 Gene Detail

Summary

• Symbol
  Gm54478
• Name
  predicted gene, 54478

• Feature Type
  miRNA gene
• IDs
  MGI:6845436
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:22396589-22396689 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  51 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845436	miRNA gene	Chr13:22396589-22396689 (-)
129S1/SvImJ	ENSMUSG00200014437	miRNA gene	Chr13:19492293-19492393 (-)
A/J	ENSMUSG00195039998	miRNA gene	Chr13:18640282-18640382 (-)
AKR/J	ENSMUSG00220034003	miRNA gene	Chr13:18555768-18555868 (-)
BALB/cJ	ENSMUSG00180038580	miRNA gene	Chr13:19001555-19001655 (-)
C3H/HeJ	ENSMUSG00175038283	miRNA gene	Chr13:19179466-19179566 (-)
C57BL/6NJ	ENSMUSG00215033351	miRNA gene	Chr13:19153064-19153164 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015209	miRNA gene	Chr13:19209494-19209594 (-)
CBA/J	ENSMUSG00210032233	miRNA gene	Chr13:19041005-19041105 (-)
DBA/2J	ENSMUSG00185014425	miRNA gene	Chr13:19735406-19735506 (-)
FVB/NJ	ENSMUSG00205052408	miRNA gene	Chr13:18884936-18885036 (-)
JF1/MsJ	ENSUMUG00000025181	miRNA gene	Chr13:19447655-19447755 (-)
LP/J	ENSMUSG00230035910	miRNA gene	Chr13:29140134-29140234 (-)
NOD/ShiLtJ	ENSMUSG00190026432	miRNA gene	Chr13:18921525-18921625 (-)
NZO/HlLtJ	ENSMUSG00225046617	miRNA gene	Chr13:22917195-22917295 (-)
PWK/PhJ	ENSLUMG00010033698	miRNA gene	Chr13:18365378-18365478 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005037501	miRNA gene	Chr13:18296546-18296646 (-)

Homology

• Gene Tree
  Gm54478
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00002075763 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075763	Ensembl Gene Model | MGI Sequence Detail	101	C57BL/6J
transcript	ENSMUST00020183048	Ensembl | MGI Sequence Detail	101	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;